Basic Information

Insect: Bombus muscorum
Gene Symbol: -
Assembly: GCA_963971185.1
Location: OZ020133.1:9809873-9813130[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 2.4e-06 0.00026 21.8 1.7 1 23 254 276 254 276 0.98

2 9 2.3e-08 2.5e-06 28.2 1.6 3 23 284 304 282 304 0.98

3 9 0.00018 0.019 15.9 0.4 1 23 310 332 310 332 0.98

4 9 9.8e-07 0.00011 23.0 1.5 1 23 338 360 338 360 0.99

5 9 1.7e-05 0.0019 19.1 1.7 2 23 474 495 473 495 0.96

6 9 2.2e-09 2.4e-07 31.4 1.6 1 23 501 523 501 523 0.98

7 9 0.0005 0.055 14.5 0.6 3 23 531 551 529 551 0.97

8 9 6.6e-05 0.0073 17.3 1.4 1 23 557 579 557 579 0.99

9 9 0.015 1.6 9.9 0.8 1 23 585 609 585 609 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	2.4e-06	0.00026	21.8	1.7	1	23	254	276	254	276	0.98
2	9	2.3e-08	2.5e-06	28.2	1.6	3	23	284	304	282	304	0.98
3	9	0.00018	0.019	15.9	0.4	1	23	310	332	310	332	0.98
4	9	9.8e-07	0.00011	23.0	1.5	1	23	338	360	338	360	0.99
5	9	1.7e-05	0.0019	19.1	1.7	2	23	474	495	473	495	0.96
6	9	2.2e-09	2.4e-07	31.4	1.6	1	23	501	523	501	523	0.98
7	9	0.0005	0.055	14.5	0.6	3	23	531	551	529	551	0.97
8	9	6.6e-05	0.0073	17.3	1.4	1	23	557	579	557	579	0.99
9	9	0.015	1.6	9.9	0.8	1	23	585	609	585	609	0.95

Sequence Information

Coding Sequence: ATGGAGAGACCCCAGGGGCAATGGGGCCCCGGGCCGGGATCTCTCCAGGACGGGGGACTGTACCcgcagcaacagcaacaacagcaacagcaggGCTCCTCCTCGTCCGGCAGTCCACAGCAGGCCTGTGGTCCTCCTGTCGAGGGAGAAAGCGGTCCCCCGCCTTCGTTGGCCTCTCCCGTGCCCTCACCGTACCCCTCGGCACCGCCTGAGCCTCAAGCCTTAACCCCACCTGACGACGATATACAATCGAATCAAGCCACCTctcagcagcaacaacaacaacaacagcagcagcagcaacaacaacaacagacGCAACAGCAAGttcaacagcagcagcagcaacaacaacaacagcaagttcagcagcaacaacagcaacaacaacaacagcagaCGCAACAGCAGGATCATTCGCCTCAACAGCAACTAACGCCTCACGAGGTGGATCGCAGCGATTGCTTCCCCGGCGCTGGAGAGTTGCAGCAATATCCACAGCACTATTTCAAGGATGCCAGGCCGCATCCGTCGCCGTCGGTACCCCCGCACATGCTCACCCCCGGTGGCTTCTCCGCGTTACACTATCTCAAGCAACCAGGCGTCATGCTGACGTCCCTCGGCCAGGGTGACGGCGGACCCAGTTTGGATGCTCACCAATATGCAAGTCCCGGGGCGCCGAACATGGCGACTGGGTTGCCGGATATCGTGCAACAGAGCGGCAAGTCCGGGAAAGGGGCGAACAGCGATCTACGTTTGTTCAAGTGTCTGACGTGCGGGAAAGATTTTAAGCAGAAGTCGACGCTGCTTCAACACGAGCGGATCCATACGGACAGTCGGCCATACGGGTGTCCAGAATGCGGGAAGCGGTTCAGGCAACAATCGCATCTAACGCAGCACCTGCGCATACACGCGAACGAGAAGCCGTATGCTTGCGTGTACTGCGAGCGTACGTTCCGGCAGCGTGCGATCCTCAACCAGCATCTGCGCATCCACTCGGGTGAGAAGCCATACCAATGTCCGGAGTGCGGAAAACACTTCCGTCAGAAGGCGATCCTGAATCAGCACGTCCGCACACACCAAGACGTGAGTCCGCATCTGATCTTCAAGAATGGAATGACGCCAACACTCTGGCCGCAGGATGTTCCATTTCCACCGGAGGAGGGCAAGGAGGAGGTGGCATCGACGTTCGGCGACACGGACACACAGTCGGGCGCGTTCAGTCCGGCGCCGGACGCGAATTCCATCCAGTATCCTGCTTACTTCAAGGACCCGAAGGGCGGGAATCACGCGGTTTTCGGTGCCGGCGGAGCAGGTAGCTTCGGTGCTCTGCAGTATATCAAGCAACAGGGCGGTAGTAAGAGCTGTTTACCGGACGTGATACAGCACGGTCGCTCCGCGGGGATGCCGTTGTACGTACGATGTCCGATCTGTCAGAAGGAATTCAAGCAAAAATCGACGCTGCTGCAGCACGGCTGCATACACATCGAATCGCGACCGTATCCTTGCCCGGAGTGCGGCAAAAGGTTCAGGCAACAATCGCACTTGACCCAACACCTTCGCATTCACACGAACGAAAAGCCGTACGGCTGCGTTTATTGCGGCCGCAATTTCCGTCAACGTACCATCTTGAATCAACATTTGCGCATTCATACCGGCGAGAAGCCGTACAAATGTCAACAGTGCGGCAAAGATTTCCGTCAGAAGGCGATACTGGATCAGCACACGCGCACCCATCAGGGTGACCGGCCGTTTTGCTGTCCGATGCCAAACTGTAGGCGGCGTTTCGCCACCGAGCCAGAGGTGAAGAAGCACATCGACAACCATATGAATCCGCACGCGGCCAAGGTGCGTAGGAACTCGAGCAGCGACTCGAAACCACCCGGTACACCGGCTGGTTTAGGCCCTGTCCCTGTACCTAGAGGTCTTACGCCAACGGTGGTGAAGCCGGAGCTCTATTTCCCGCAATGTTACGCGCCCGCGTTCAATCATCAACCGCCAGTGTCGACGGCGCAGTTCCCGGCCCAGGCAAACGGAGTATCCGTTGCCGGCGAATTCAAACCACCGACCGGTCTGCCGCCGCAGTGA
Protein Sequence: MERPQGQWGPGPGSLQDGGLYPQQQQQQQQQGSSSSGSPQQACGPPVEGESGPPPSLASPVPSPYPSAPPEPQALTPPDDDIQSNQATSQQQQQQQQQQQQQQQQTQQQVQQQQQQQQQQQVQQQQQQQQQQQTQQQDHSPQQQLTPHEVDRSDCFPGAGELQQYPQHYFKDARPHPSPSVPPHMLTPGGFSALHYLKQPGVMLTSLGQGDGGPSLDAHQYASPGAPNMATGLPDIVQQSGKSGKGANSDLRLFKCLTCGKDFKQKSTLLQHERIHTDSRPYGCPECGKRFRQQSHLTQHLRIHANEKPYACVYCERTFRQRAILNQHLRIHSGEKPYQCPECGKHFRQKAILNQHVRTHQDVSPHLIFKNGMTPTLWPQDVPFPPEEGKEEVASTFGDTDTQSGAFSPAPDANSIQYPAYFKDPKGGNHAVFGAGGAGSFGALQYIKQQGGSKSCLPDVIQHGRSAGMPLYVRCPICQKEFKQKSTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPYGCVYCGRNFRQRTILNQHLRIHTGEKPYKCQQCGKDFRQKAILDQHTRTHQGDRPFCCPMPNCRRRFATEPEVKKHIDNHMNPHAAKVRRNSSSDSKPPGTPAGLGPVPVPRGLTPTVVKPELYFPQCYAPAFNHQPPVSTAQFPAQANGVSVAGEFKPPTGLPPQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01418493;
90% Identity: iTF_00684322;
80% Identity: iTF_00224034;