Basic Information

Insect: Bombus muscorum
Gene Symbol: -
Assembly: GCA_963971185.1
Location: OZ020142.1:3491203-3493539[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00027 0.03 15.3 3.9 1 23 228 250 228 250 0.98

2 11 0.014 1.5 10.0 11.8 1 23 256 278 256 278 0.96

3 11 6.3e-05 0.007 17.3 6.6 1 23 284 306 284 306 0.99

4 11 0.00029 0.032 15.2 2.3 1 23 312 334 312 334 0.95

5 11 1.4e-06 0.00015 22.6 1.9 1 23 340 362 340 362 0.97

6 11 2.9e-05 0.0032 18.4 1.1 1 23 368 390 368 390 0.97

7 11 8.3e-05 0.0092 17.0 1.6 1 23 395 417 395 417 0.97

8 11 3.2e-05 0.0035 18.3 0.1 1 23 423 445 423 445 0.96

9 11 7e-05 0.0077 17.2 0.2 2 23 457 478 456 478 0.96

10 11 9.5e-07 0.00011 23.1 2.0 1 23 544 566 544 566 0.98

11 11 1.1e-05 0.0013 19.7 4.4 1 23 576 598 576 598 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00027	0.03	15.3	3.9	1	23	228	250	228	250	0.98
2	11	0.014	1.5	10.0	11.8	1	23	256	278	256	278	0.96
3	11	6.3e-05	0.007	17.3	6.6	1	23	284	306	284	306	0.99
4	11	0.00029	0.032	15.2	2.3	1	23	312	334	312	334	0.95
5	11	1.4e-06	0.00015	22.6	1.9	1	23	340	362	340	362	0.97
6	11	2.9e-05	0.0032	18.4	1.1	1	23	368	390	368	390	0.97
7	11	8.3e-05	0.0092	17.0	1.6	1	23	395	417	395	417	0.97
8	11	3.2e-05	0.0035	18.3	0.1	1	23	423	445	423	445	0.96
9	11	7e-05	0.0077	17.2	0.2	2	23	457	478	456	478	0.96
10	11	9.5e-07	0.00011	23.1	2.0	1	23	544	566	544	566	0.98
11	11	1.1e-05	0.0013	19.7	4.4	1	23	576	598	576	598	0.97

Sequence Information

Coding Sequence: ATGTGCACCACCCCTGGCAACGTAGGTACAGGATTTGGGTATGCTTGGTCCTTTGGTGGACCTGGAGCAGAAACCCGAGAAAATGCACAGGGTGAACTTACTACAAATATTAGTTATGCTGTGAATAATAATCAGGACCAAGGAACCAGTCAGAAGATACAGGTTGACATTAAACCAACTAAAGTTGCCAATAGTACACATCGTAGACCCATGTTCACTATGAATGAAACTTGTCAACAGACTCCGACAACGCATCATACAGCTGGAGCTCATAATCAAACACACGGCACGCATGTTCGTACTAAAAAACATCATGATGTATTTTCATTAACATGCGACAAGGGAGGTTGTAATTGTGATGCTGCACATGCAACACCCCCACCATCtcttttttcaaatacttTAGTTTTTACTACAGCTGATAAACACGCTATGAGTAAGCATTTCATGACACCTCTTGGACCACTACAGCTCACAGCAGAAGAgtgcaatgaaattttaatgaaaagagCAGCAGCTGCTTCAAACCAAGCCAATGTAAACAATGTGGCAACGAGCCAGACAGATAGTACAGCTCACTTTGGGCATGTTTTAACGCATGTGAACACGACACAAATCGAAACAAAGGTCAAGCAACAACAAGATATGGGAAGTCAAGTCAGAGTACCAAAAGAAAGACCGTATTCTTGTTCAGAATGCGGGAAGTCATTTCTCCTGAAACATCACCTTACAACACATGCAAGGGTACATACAGGAGAACGACCTCATGTTTGCGTTCATTGTGGTAAAAGTTTTGCACACAAACACTGTCTTCATACTCACCTTCTCCTTCACAGTGCGGACCGACCATACCAATGCAGAGAATGTAAAAAGTCTTTTACACTAAAACACCACCTTGTAACGCACACACGGGTACATACAAGAGATCGTCCATTTGTTTGTCAAGAGTGTGGAAGATCATTTCCTTTAAAACGTCATTTAGTGACACATAGTAAATTCCATTCAGGGGAGAGACCTTTTGTTTGCGAAGAATGTGGAGAATCATTTTCTCAAAAGGATCACCTAACAATGCATTCGCGCTTCCATGGCAGTTTACATCCATTTGTTTGTCACGACTGCGGAGCAACCTTCCAGAGAAAGTTTGAGTTAGTGAATCATGGTCGTTTGCATGGCAGAGTTCCACATTCGTGTACTGTTTGTGGGAAAGAATTTCTCCAAAAGAGAACACTACTAGCACACATGCGCTTACATACAGGAGAAACGCCATTTGCTTGTACCGTTTGTGGAGAAGCATTTCCTCGAAAAACAGACCTGGTAACCCATTCGAAGATACATAACAATAATACGAACACAGACGAAAAATCTCTTATGTGCAGGGAATGTGGATTGGACTTTTCAAACCGGGAAGCTCTTACCCTGCACTTAAGGTTACATTCTGGTGATCGTACTCTTGTAACAGATCTCTGTGGGTTAGCAGCTGCTTTCCAACAAACTCCTGGACACTTCCTTACACCCAACACTTCTGGAACTCATCAGATGAATGGACCCATCGGAAATCCCGGTGTCAGCCATATGCATGGTGCAACGCAAACATCACCACCTGTAGGAACAGGTCCGAAACCAAAACCACACGTATGTCCCGATTGCGGTCGTGGTTTCGCGCAGAAACATGGGTTGTCTCAACATCAAAGACGTCATACGGATGGTAGCTGCCATATAAGATCACACGTGTGCGATAAATGTGGAAAAGCGTTTTATCAGAAGAATCATTTGTTATTACATCAACGCCAACACATGGATCCACCGCCCAGCATACTTCGGCAACAACAGAGACAAGCTGCACAAGCTGCTGCTCAAcaagcacaacaacaacagcagcagcagcagcagcagcaacaacagcagcagcagcagcaacaggTACAGCAGCAACAAGTGCAACAACAAGTGCAACAACAACAAGTGCAGCAACAGCAAGTGCAACAACAAgtgcaacagcagcagcaacagcagcaaccTCAGCAGCAACAAACAACGTGCACTGTAGATACAAAAACAATACAGCTTCAAGCAATACAACAAGTGCAACAACAAGTTCAACAACAGGTACAACAGCAGgtacagcaacagcaacaacaacaacaagcGTGCTCTGTGGACACTAAAGCAATACAGTTAAATGTCAGTATGTGA
Protein Sequence: MCTTPGNVGTGFGYAWSFGGPGAETRENAQGELTTNISYAVNNNQDQGTSQKIQVDIKPTKVANSTHRRPMFTMNETCQQTPTTHHTAGAHNQTHGTHVRTKKHHDVFSLTCDKGGCNCDAAHATPPPSLFSNTLVFTTADKHAMSKHFMTPLGPLQLTAEECNEILMKRAAAASNQANVNNVATSQTDSTAHFGHVLTHVNTTQIETKVKQQQDMGSQVRVPKERPYSCSECGKSFLLKHHLTTHARVHTGERPHVCVHCGKSFAHKHCLHTHLLLHSADRPYQCRECKKSFTLKHHLVTHTRVHTRDRPFVCQECGRSFPLKRHLVTHSKFHSGERPFVCEECGESFSQKDHLTMHSRFHGSLHPFVCHDCGATFQRKFELVNHGRLHGRVPHSCTVCGKEFLQKRTLLAHMRLHTGETPFACTVCGEAFPRKTDLVTHSKIHNNNTNTDEKSLMCRECGLDFSNREALTLHLRLHSGDRTLVTDLCGLAAAFQQTPGHFLTPNTSGTHQMNGPIGNPGVSHMHGATQTSPPVGTGPKPKPHVCPDCGRGFAQKHGLSQHQRRHTDGSCHIRSHVCDKCGKAFYQKNHLLLHQRQHMDPPPSILRQQQRQAAQAAAQQAQQQQQQQQQQQQQQQQQQQVQQQQVQQQVQQQQVQQQQVQQQVQQQQQQQQPQQQQTTCTVDTKTIQLQAIQQVQQQVQQQVQQQVQQQQQQQQACSVDTKAIQLNVSM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01509061;
90% Identity: iTF_00684308;
80% Identity: -