Basic Information

Insect: Bombus impatiens
Gene Symbol: -
Assembly: GCA_000188095.4
Location: NT:260460-264266[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.014 0.86 9.4 0.2 6 21 12 27 6 28 0.86

2 14 5.8 3.6e+02 1.1 0.0 2 20 34 52 33 54 0.89

3 14 0.62 38 4.2 0.4 1 12 236 247 236 256 0.89

4 14 0.0089 0.56 10.0 3.1 1 23 366 388 366 388 0.97

5 14 0.00015 0.0093 15.6 0.2 2 23 392 413 392 413 0.97

6 14 0.00074 0.046 13.4 4.9 1 23 424 446 424 446 0.97

7 14 0.023 1.4 8.7 0.1 1 23 465 486 465 486 0.76

8 14 0.00044 0.027 14.1 0.1 2 23 492 513 491 513 0.95

9 14 3.2e-05 0.002 17.7 4.8 1 23 542 564 542 564 0.99

10 14 1.4e-06 8.5e-05 22.0 3.7 1 23 570 592 570 592 0.96

11 14 0.00072 0.045 13.4 3.9 3 23 600 620 598 620 0.97

12 14 9.6e-07 6e-05 22.5 0.8 1 23 626 648 626 648 0.98

13 14 6.1e-05 0.0038 16.8 0.2 1 23 652 674 652 674 0.99

14 14 0.00026 0.016 14.8 0.2 1 23 682 704 682 704 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.014	0.86	9.4	0.2	6	21	12	27	6	28	0.86
2	14	5.8	3.6e+02	1.1	0.0	2	20	34	52	33	54	0.89
3	14	0.62	38	4.2	0.4	1	12	236	247	236	256	0.89
4	14	0.0089	0.56	10.0	3.1	1	23	366	388	366	388	0.97
5	14	0.00015	0.0093	15.6	0.2	2	23	392	413	392	413	0.97
6	14	0.00074	0.046	13.4	4.9	1	23	424	446	424	446	0.97
7	14	0.023	1.4	8.7	0.1	1	23	465	486	465	486	0.76
8	14	0.00044	0.027	14.1	0.1	2	23	492	513	491	513	0.95
9	14	3.2e-05	0.002	17.7	4.8	1	23	542	564	542	564	0.99
10	14	1.4e-06	8.5e-05	22.0	3.7	1	23	570	592	570	592	0.96
11	14	0.00072	0.045	13.4	3.9	3	23	600	620	598	620	0.97
12	14	9.6e-07	6e-05	22.5	0.8	1	23	626	648	626	648	0.98
13	14	6.1e-05	0.0038	16.8	0.2	1	23	652	674	652	674	0.99
14	14	0.00026	0.016	14.8	0.2	1	23	682	704	682	704	0.97

Sequence Information

Coding Sequence: atgggCTCGTTGAATCTCATTTGCCCGATGTGCTGTGGTGAAACGTTTAACAATCCACAGTCATTAAAGTACCATTTATTAAGCATGACGGACAACCTATACTGTCCTAGTTGTTCGCAGCGATCTGACTCAGTAATGGCACTCATTCAACATTTGGATCGATGTGGACAAAGCGTTGAATCAGAGGCATCATCTGAATCAAAGTACGAGCCTAAAGAAGAAACTCAACAAGAATCTCATCCGGACACAGAAGTGCTAATGgaCACAAATGTCGAAGGAATAGATCAAAGTTTTCTAGCAACTGTAAATGATAGTGGAATTATGATAGTTGGAGGACCTCAAACTATACAAGTTGATGAAAATGgaGATATTAAAGTCGTAGAAAAGATGGAAACTGAAGAGACACAAATGGAGCAAAATTCTCTGGAATTTAAGATTACTGAAAAAGTTCCTAATATCACAAGCAAAGCAGAAGAGAAATCTTTATCCCAGGATCAATTAGTAACAATTTCAACCACTTCAGAGACAGAtgataaaaacagaaataaaaatgtaattactaTTTTACCTGATGGGTCAGAACTTTTAGATGGAGAAACTGGCGCTCTGATAAATATGGATCATATAAATGATGTAGGTGAATTAGATGAAGATGGGCTTCTACATGTTAAACAAGAACTTTGTGAGaTAGAACCAGAAGCAGTTTATAGTTGTACTAGTTGTGATATGAGCTTTAATTCTGTTGTGGaacatataaaacaatttcatgaTGGACAAGAAGTATTACTTGAAATAGCTGATCAGTTAGATGATATACCTACAGTACCTGCAACTAACACCTTACATTCAGAATCAGGAAATGTAATCAATACTAGACAAAGACAGAGTATGAATACTCTGCGTACAGAAGAGTGCGTAGACAGTGAAGGAAGATTATATACAAGAAAAGTAGTACAAATAGAAAGATTCTGGGATAGAACTCCAGCACAAACATCACTTCAATCTACTAAAGCACCAATGATTGAAAAGTTCTTTTCCAATGTAGAAGGAGTGAAAgtacgagaaaaaagattaGCTGCAACACCAATGAGAATGTACAGATGTAATCAGTGCCTTCAGCAGTTCTCCAAATTAGGAAACTTCCGAGTGCATGCATGTCTTCACGGCAATAATCGTTGCGATAGTTGTGACCAAACTTTCGCAACACCGAAAGCATTACAACTACATGCAAAGGTACACGAAGGTGAACCTGATCCAAATCAAAAAACTTTCATATGCGAAACTTGTGGTACAGAATTTTGTTCGCACAAAAGCTTGCGCTTGCATTCTCGAATGCACGCGCCGGTCAGAGCAAGGCATGTTGATGCACCTGAAGGAACACCTAGTGCAACATTTACGTGTCCCGAGTGTgGTAAAACGTTAGCGGAATCATACAAAGAAGCACACATGGCATTACATTCTGGTGACTCTGTAACTTGTACTGTATGcaatagaaaattcgattctGCTGATAGCTTAGCAATGCATGCCGCAGTACATACAGAACTAAGTCAACCACATTCGCCAACACCACCTACTACTGAAACAGCTACAACTGCCGAACCCGCAGAAAGTCAAAAGCCTTATCAGTGTCAACATTGTGGTCGAAGATTTACGAGACCTCACGAGAAAGTGAAACACGAACGTATTCATACCGGAGAAAAGCCACACGCGTGTGAAGTTTGCGGTAAAACTTTTCGTGTTTCTTATTGTCTGACTTTACACATGAGAACTCACACTGGTGTCAGACCATATGGATGCCAACATTGTGGTAAAAGATTTAAAGCTTCTTCTGTGTATAATCATCATTTACTTACACACGGGGAAGAACGTGCTTATACGTGCCCTTATTGCCCAAAAACTTTCAAAACACGTGTTCAATTAGCAGGACACAAAAACAGCCACACTAAACCATTTCGATGTACTGAGTGTTCCCGCCCATTTGCTTCCTTGTACGCCGCACGTGCTCATATACAAACTCACAAAAAAGACAATAATCTAAAATTCAGTTGTTATATTTGTGGTGCATCCTATGGTAGAGCATTTGCATTGAAAGATCATTTGAAACAACATGGTCAAGATGTGATAGCTCCACCGGAGCCAgtaagagaagaagaaattcacGAAGGAGAAGATTTTTTACTTGCAGAAGAAGAGGTTGAGGATGATGAACTAGTTATTCCGTCACCGTTACCCGTTGCACAATCATCAGAAGCAGATGACACAGAATGA
Protein Sequence: MGSLNLICPMCCGETFNNPQSLKYHLLSMTDNLYCPSCSQRSDSVMALIQHLDRCGQSVESEASSESKYEPKEETQQESHPDTEVLMDTNVEGIDQSFLATVNDSGIMIVGGPQTIQVDENGDIKVVEKMETEETQMEQNSLEFKITEKVPNITSKAEEKSLSQDQLVTISTTSETDDKNRNKNVITILPDGSELLDGETGALINMDHINDVGELDEDGLLHVKQELCEIEPEAVYSCTSCDMSFNSVVEHIKQFHDGQEVLLEIADQLDDIPTVPATNTLHSESGNVINTRQRQSMNTLRTEECVDSEGRLYTRKVVQIERFWDRTPAQTSLQSTKAPMIEKFFSNVEGVKVREKRLAATPMRMYRCNQCLQQFSKLGNFRVHACLHGNNRCDSCDQTFATPKALQLHAKVHEGEPDPNQKTFICETCGTEFCSHKSLRLHSRMHAPVRARHVDAPEGTPSATFTCPECGKTLAESYKEAHMALHSGDSVTCTVCNRKFDSADSLAMHAAVHTELSQPHSPTPPTTETATTAEPAESQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYGCQHCGKRFKASSVYNHHLLTHGEERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKFSCYICGASYGRAFALKDHLKQHGQDVIAPPEPVREEEIHEGEDFLLAEEEVEDDELVIPSPLPVAQSSEADDTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00625657;
90% Identity: iTF_00226756;
80% Identity: -