Bimp000982.1
Basic Information
- Insect
- Bombus impatiens
- Gene Symbol
- -
- Assembly
- GCA_000188095.4
- Location
- NT:5156-9084[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00054 0.034 13.8 0.5 2 23 298 319 297 319 0.95 2 11 0.016 1 9.2 0.9 1 23 327 350 327 350 0.94 3 11 0.00068 0.042 13.5 3.0 1 23 407 429 407 429 0.98 4 11 1.4e-06 8.4e-05 22.0 1.5 2 23 479 500 478 500 0.97 5 11 1.2e-05 0.00077 19.0 0.8 1 23 505 528 505 528 0.96 6 11 3.4e-06 0.00021 20.7 0.3 1 23 566 588 566 588 0.98 7 11 5.8e-07 3.6e-05 23.2 0.9 1 23 598 620 598 620 0.96 8 11 1.6e-06 0.0001 21.7 1.2 1 23 626 648 626 648 0.99 9 11 8.3e-06 0.00052 19.5 0.2 1 23 654 676 654 676 0.98 10 11 6.3e-05 0.0039 16.8 4.6 1 23 682 704 682 704 0.98 11 11 0.00025 0.015 14.9 0.4 1 21 710 730 710 731 0.94
Sequence Information
- Coding Sequence
- atgattattaaataTGCATCGAACAAGAGAAGTGTTCAAAAACATTGTCGGTTTCCTAAGAGGGGGAGATCGAGTCGTAGCTTGACTCCCAAATGCATTAAAATGGAAGTTTCGAAACACGAGCAATTAGTTGATACATATGAGAAAATTTATGGAGATGAATGCCGAATCTGTTTGAAAAAAGCTGTTGAAATTTgtgaactttttaaaaatgggGACGCTATTCCTCGAAAACTTATGGCCGTTGCTTCTGTACAGGTTGAAGAAGGAGATGGTTTACCACCAGTGATTTGCTTGCCTTGTAACCAGCGTTTAGATGCATCTTACGATTTTAAATgtcaaatacaaaattcagaTGAGAAGCTTCGTCAAATTCTAAAGCTGAAATCCTCTTCTAACGATTCTGTTACCAACGCCAGCACCATAGTTACAGCAATAATCGCTGATGTGATATCTAGCGTAATATCTTctgagaaagaaaatacagaaaaacaAGAAGTTTGTTCTACAAATTTCTGCAATGATAATTTTTGCTTTACGAAAGATGAAACAGCTTTTTGTCTCAATTCAGGGAAGAACTTGTTCTGTTACGAAAAAGAATCGTCACACAGTCGATTAAACGATACAGAGCAAAGAAAGAGCctggaaaatgtaaatgtttataaaagtttattagaGGATGATTCTGCAAGACaaatcgattcgataaaacaaGAGTTTGTTTTATTAGACGATCATATAGTACAAACTAAAGATGTTCCATTAAAGGGAGAAGCGAATATCGAAGAAAGTCAACAGATGTCAGAAGAGACATCAAAGACAGATAGTATTCaagatgatgatgatgatgatgatgatgaaaaACCATTAATTTCACGCACAACTAGATTACGCTGTACACGATGTATCAAGTCTTTTCGTACAAAAGTGGCCTTGCAGAGACACGCCATTGTACATAAACGTAAAATCAAATTACGTTATGTTTGTTATGTTTGCGATAAACAATATCCTACGTTTGCAAAAGTGAAAAATCATGTTGCAATTTGCCACGAAGCTCGcgataggaaagaaaatattcaacataAGAGAATTAGTTATGAGCAAAATAAAGCAATCGCGAGTGTGCAAGATAAAAGGATTAATAGTAATGTCCAAgataaaagaataaaaattcaaaaaaatgaTGACTCTCCTAAGGAACAGCGAAAAAGCTTAAAATTTACTTGCAAAGTGtgtttaaaacaatttacttATCAAAAATCTTTTATCACACACGCTAAAAGTCATCCAGAGTATAAAATGGAAGAATTGGATGATTCGTCTCAATGTTGGGTAAAAGAAAGATGTACAGAAACCGTggtggaagaggaagaaaatgaagaagaggaagacgaagaagatgaGGAAGATGAAAACCTTCCTGCTGAAAGTTTACAGTGCACTCAATGTGGGAAGTTGTTTGcaacaaaaagaaatcttaaaaGGCATGTCTCCACACATAGTGgattaaaatatacgtgtGAAACATGTGGTAAAGGATTCTCAAGAGTGGACAAATTAAAAGATCATGAACAATCAAAGCACAAGGCTGAATTATTCGACAATTCTGATTTGGATGATAAAGAGGACACAGACAATGTAGTTAATAAAGGTGACTGtttagaaggaagaaagaaagaTCGTCACAATAGACCTCACAAATGTGCAATCTGCCCTAAATCGTTCGCGCAAGCGCAATCGCTAGCGAATCACATAGAACGTCATAAGCGGGTAAAAGAAACTCAAAAAAGATTTCTTTGCGAAGTCTGTAGCAAGTGTTTTGCACAGAGTGGTTCTCTGGTTGCGCACATGCGTACACATACAGGAGTTAAGCCATACGTTTGTAATGTGTGCAGTAGAGCATTTACGAAGAGCACTTATCTACAATTGCATCTACGTACTCATAGCGGTGAAAAACCTTATATTTGCCAGTATTGTAGCAGGGCGTTTGCACGTGCTAACACATTAGCACGGCACATAACAATGCATACAGGGGAAGCAAAATATCATTGTCAGATTTGTACAAAGTCATTTAGAAGACTGACTTCGTTGAATGAACACACTTATACGCACACTGGACAGAGACCATACGCTTGcaaaatttgtacaaagaGATATAACAATGCAGGGTCACTTTACGCGCATAGAAAGAAATGCAAGGCACAGCAATTATCTAACCCTGGATTCGCGGTTTCCGTGGAAACCTGTACTGTATCAGAACAACAAGAAGTAGACGTTCCACAAGTCTTGATCTATTCCCACAGGAAATTAGTGGAGGATGCAACTGTTGGGCAAGTCACGCCCACACCACAGTACATGCTCGCAAATGTACACAATCAGAAGAATTTGGGATCAAATGTTATACAATCGTTTCCAGTGGATGATTCaaatgtttatacaattaatacGAAGCAATTTAAGAATCcctattatacaatttatccaaacatataa
- Protein Sequence
- MIIKYASNKRSVQKHCRFPKRGRSSRSLTPKCIKMEVSKHEQLVDTYEKIYGDECRICLKKAVEICELFKNGDAIPRKLMAVASVQVEEGDGLPPVICLPCNQRLDASYDFKCQIQNSDEKLRQILKLKSSSNDSVTNASTIVTAIIADVISSVISSEKENTEKQEVCSTNFCNDNFCFTKDETAFCLNSGKNLFCYEKESSHSRLNDTEQRKSLENVNVYKSLLEDDSARQIDSIKQEFVLLDDHIVQTKDVPLKGEANIEESQQMSEETSKTDSIQDDDDDDDDEKPLISRTTRLRCTRCIKSFRTKVALQRHAIVHKRKIKLRYVCYVCDKQYPTFAKVKNHVAICHEARDRKENIQHKRISYEQNKAIASVQDKRINSNVQDKRIKIQKNDDSPKEQRKSLKFTCKVCLKQFTYQKSFITHAKSHPEYKMEELDDSSQCWVKERCTETVVEEEENEEEEDEEDEEDENLPAESLQCTQCGKLFATKRNLKRHVSTHSGLKYTCETCGKGFSRVDKLKDHEQSKHKAELFDNSDLDDKEDTDNVVNKGDCLEGRKKDRHNRPHKCAICPKSFAQAQSLANHIERHKRVKETQKRFLCEVCSKCFAQSGSLVAHMRTHTGVKPYVCNVCSRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCQICTKSFRRLTSLNEHTYTHTGQRPYACKICTKRYNNAGSLYAHRKKCKAQQLSNPGFAVSVETCTVSEQQEVDVPQVLIYSHRKLVEDATVGQVTPTPQYMLANVHNQKNLGSNVIQSFPVDDSNVYTINTKQFKNPYYTIYPNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00118159;
- 90% Identity
- iTF_01417854;
- 80% Identity
- -