Bign002854.1
Basic Information
- Insect
- Bombus ignitus
- Gene Symbol
- -
- Assembly
- GCA_014825875.1
- Location
- JACXIR010000738.1:1171253-1176713[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.12 13 6.8 1.0 2 19 86 103 86 106 0.93 2 12 0.0033 0.35 11.7 0.5 1 22 112 133 112 133 0.95 3 12 0.015 1.6 9.6 7.0 1 23 143 166 143 166 0.93 4 12 1.1e-05 0.0012 19.5 6.3 1 23 491 514 491 514 0.97 5 12 1.4 1.5e+02 3.4 0.3 5 23 521 540 520 540 0.94 6 12 0.00069 0.072 13.8 0.8 2 23 547 568 547 568 0.97 7 12 0.38 40 5.2 2.8 1 20 595 614 595 616 0.90 8 12 0.52 55 4.8 1.5 1 22 716 737 716 737 0.90 9 12 3.4e-05 0.0036 17.9 0.9 2 23 745 767 745 767 0.94 10 12 0.0018 0.19 12.5 3.8 1 23 777 800 777 800 0.95 11 12 0.23 25 5.9 0.3 3 19 821 837 820 840 0.93 12 12 0.0037 0.39 11.5 5.3 1 23 881 904 881 904 0.94
Sequence Information
- Coding Sequence
- ATGGACCCTTTTGAATATGCAATAAGCATAAAGGAAGAGCCAATCGATCCAGGGATCTGCAATGATTTGTCGCCAATTGATACGAATACAGAGAATGAAAATGAAACAGCGACGTTTAAAGCTGAATCTTCGGATGGCGTTTATTGTAAAAATGAAGAATCCGCGTTTCCTCAAGAAAGTACGTATTTAGAAAGTAACAAATCGGATGCTGATAAACGAAAAAGTAAACATAAAGTACCTTCAAACAAAAGAAGAAAGTGCAATGTTTGTTTGTTAACTTTTCAAACTAAACATTTATTGGAACTGCATAATAAATTATATAGCTGTAATATATTTAAATGTAATAATTGCACTGCCATCTTCACTATGCGTATTTCGTTGGTACGTCATTTAAAGAAGCGATGTTCTACGAAAAAGTCGTCGGGATATAGATGTAATTTTTGTAACCGAAATTTTTCCTATAAAAGACATGTCCAATCTCATTTATTCCATGCGCATGGGAAAGCGATATTTTCTGGTGAAAGCAAAATTATGGAAACATCTTCTGAATCGTTAGAAAAGTCGAATAATTCGGATGGTATAGTCATGTCAGAATCAAATACTTCACACAGTCCCTGCCCAAAAGACGTAAATAGCTCAATAAATATATCTTTGAAACTATCTAATAGTTCAAACAATACACCCACCGAGGGTTCCAGCAGCAAGATCAAGTCTAAGCATCCGAAATGCTTAAACGATTCGTATGGCACTCCTTCGAAAACGATGAAGCAGACCGTCCTTACAGACTTCATACCGCTGTACAAAGACAAACCGAACGACGAATGGGTTAGTCCGGAAAAAGTTATCGATACGGGGAATATTCCTGTTAATGCGACTATTATTCCAACTTCAACGCTCGAGACATTCGATAACGAGACATCAGCGGCTGCAGAAGTTATTCAGATGTCGAATTCTGTTAAGCGAATCGAATCTCCTGTTAGGAAAAAGCCATTTGTTCAAATTCATGTGAATTTAAAAACAATGATATCTTTATTAAGGAACAAAATAAAGGCTAAACTTGAAAGCTCTAATACCTCGCACAATATGTCTTATAACCTTAGATCAGTGAAAAGACGTTCTTCTTCTTTATATGATTTTTACGATTTATTGAAGTTAGAGACCTTTGGAAAATCAAGACAATCTTTTAAAAGAAACAAGTCCCCCTATATATTTAACCAAAGTAAAAGATCTGCAGCTGAAGTTGAGTGTAAAGAATGTGTGGTCCGTTTGGAGAAATGCGACAAATTCTTGGAGTCTCCTAGTTTTGTGTCAAACGTAGACGAAGACGAAAACGAAGACGCTTTGAAAGCTGACACGATCGCGTCAAAGCGATTCAACGAACTTGGAAAATCTTTCGCTGATAGATTAATCGTACCTCAACGAGAATCGGTTGAACTTCAGAAGAACTTTAAGGTCAATAAGCAGAAAATATTTCAATGTCATATATGTCAAAAATCGTTTTGTTTGAAGGAGAACCTGCGCGAGCATATGAAATTGTTCCATACGATTTACATGTCGAGCATATGCAATGCCCGTTACACGTCCATGAATAAATTACTAACTCACTATCTACGTCAGCATATCGTGTTTAAACGAAGGGAATGTTGCGTGTGTTATGAGAAGTTTGACACGTCGGCATTGTTGAAGCAACACATGATTGTGCATTGCTTGAAGACCATAAGATCAAAAAAGGACGCTCCAATGGTTGATGTTGAAAAAAACTGCAACGCATTCAAGAAACAATACAGATGCAAAGGTTGTCGCAAACGATTTTGGCTATACTCATGTTTGAAACAACATAAGGACGTATGTCGTCGAATGAAAGTCTTAATAAATAAACAACGTGTACCTTGTGTAAACCATTTGTCTCGGTCCTTGAATGAACCAAGTGACATGGAACTCGGCATAGTACAGTCACCTGATTTTGAACAAATGTTGGATGTTTCGGGTGAGACGACAAGATCTTTGGAAAATTATTTGACCCCGAGTACGCTTATTACGGATGATACTTTCTCTTCGTCGTTCGATACAGTTGCAAAGAACAAAAGATTACGTAATGAGAATAAGGTAAAAGGTCGCAAAGCGAACAAGATGGACGGAACAAAGTTTCCTTGCATTACCTGTGGAACACAATTCCAAAAATTTAAAAATTTGTGCATACACGAGCGCACCTATTGCCAAACAGCCACCGAGAAGTGTAACGATTGTAACACGATGTTTTCCACTAAAAGATTATTACAGCTTCACATACTTGCTACTCATACGCCTTCGTGCTCGATAAACTACAAATTCTTTTGTAAGTTCTGCAATCAAGGATTTGTTAAGAAAACGAATCTTCAAATTCACGAACGACACTTGCATATTGGGCAGGATACTAGACTGGAGCTGAATTCCGATTGCGTTGTGAAAAATAAACCAATCTGTAATATATGCCATTTGTTATTCGAATCCTACGAACATTTAGTCGAGCATAATATGTATTATTACAAGGGCAATGATTTTTTATGCGCAATATGTGGCAAGTTGTGTCAAGGAATGTACAAGTTTTATCATCACAACGAGTTGGAGCATTGTCCGGACGAACCACGGAAATTGCACCCTTACAGATGCAATACTTGTAACGAAGGCTTCAACTACGAATCACATTTACACGCACATAAGCTACACGTTCATTCGCACGATTCGGCCGCTGACGAGGCGCGCGACCGCGATACATCGAATTAG
- Protein Sequence
- MDPFEYAISIKEEPIDPGICNDLSPIDTNTENENETATFKAESSDGVYCKNEESAFPQESTYLESNKSDADKRKSKHKVPSNKRRKCNVCLLTFQTKHLLELHNKLYSCNIFKCNNCTAIFTMRISLVRHLKKRCSTKKSSGYRCNFCNRNFSYKRHVQSHLFHAHGKAIFSGESKIMETSSESLEKSNNSDGIVMSESNTSHSPCPKDVNSSINISLKLSNSSNNTPTEGSSSKIKSKHPKCLNDSYGTPSKTMKQTVLTDFIPLYKDKPNDEWVSPEKVIDTGNIPVNATIIPTSTLETFDNETSAAAEVIQMSNSVKRIESPVRKKPFVQIHVNLKTMISLLRNKIKAKLESSNTSHNMSYNLRSVKRRSSSLYDFYDLLKLETFGKSRQSFKRNKSPYIFNQSKRSAAEVECKECVVRLEKCDKFLESPSFVSNVDEDENEDALKADTIASKRFNELGKSFADRLIVPQRESVELQKNFKVNKQKIFQCHICQKSFCLKENLREHMKLFHTIYMSSICNARYTSMNKLLTHYLRQHIVFKRRECCVCYEKFDTSALLKQHMIVHCLKTIRSKKDAPMVDVEKNCNAFKKQYRCKGCRKRFWLYSCLKQHKDVCRRMKVLINKQRVPCVNHLSRSLNEPSDMELGIVQSPDFEQMLDVSGETTRSLENYLTPSTLITDDTFSSSFDTVAKNKRLRNENKVKGRKANKMDGTKFPCITCGTQFQKFKNLCIHERTYCQTATEKCNDCNTMFSTKRLLQLHILATHTPSCSINYKFFCKFCNQGFVKKTNLQIHERHLHIGQDTRLELNSDCVVKNKPICNICHLLFESYEHLVEHNMYYYKGNDFLCAICGKLCQGMYKFYHHNELEHCPDEPRKLHPYRCNTCNEGFNYESHLHAHKLHVHSHDSAADEARDRDTSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -