Basic Information

Insect: Bombus haemorrhoidalis
Gene Symbol: -
Assembly: GCA_014825975.1
Location: CM026167.1:12537775-12541066[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00035 0.032 14.8 4.1 1 23 228 250 228 250 0.97

2 10 1.1e-05 0.00099 19.5 1.5 1 23 256 278 256 278 0.98

3 10 0.00082 0.074 13.6 3.8 1 23 284 307 284 307 0.95

4 10 0.25 23 5.8 0.3 1 18 313 330 313 330 0.87

5 10 6.3e-05 0.0057 17.1 0.8 1 23 334 356 334 356 0.98

6 10 0.00028 0.025 15.1 1.4 1 23 364 387 364 387 0.97

7 10 2.4e-05 0.0022 18.4 2.5 2 23 394 415 393 415 0.97

8 10 0.00021 0.019 15.5 0.3 1 23 421 443 421 443 0.99

9 10 6.2e-05 0.0056 17.1 5.8 1 23 449 472 449 472 0.96

10 10 1.2e-07 1.1e-05 25.7 1.2 1 23 486 508 486 508 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00035	0.032	14.8	4.1	1	23	228	250	228	250	0.97
2	10	1.1e-05	0.00099	19.5	1.5	1	23	256	278	256	278	0.98
3	10	0.00082	0.074	13.6	3.8	1	23	284	307	284	307	0.95
4	10	0.25	23	5.8	0.3	1	18	313	330	313	330	0.87
5	10	6.3e-05	0.0057	17.1	0.8	1	23	334	356	334	356	0.98
6	10	0.00028	0.025	15.1	1.4	1	23	364	387	364	387	0.97
7	10	2.4e-05	0.0022	18.4	2.5	2	23	394	415	393	415	0.97
8	10	0.00021	0.019	15.5	0.3	1	23	421	443	421	443	0.99
9	10	6.2e-05	0.0056	17.1	5.8	1	23	449	472	449	472	0.96
10	10	1.2e-07	1.1e-05	25.7	1.2	1	23	486	508	486	508	0.98

Sequence Information

Coding Sequence: ATGACAACTAACGTAGCAACAATTAAGTTAGAAGAGGAGCAGGAATCTGTAACGGAGATACAGACATACTTAGAAACATTTAATAGAGAAATAGAAGGAGGTCAAGGGGAGCAATTACAACATGTACAGTTGCAACAAGTGGAAGGACTGTCTGGTGGAGAAGAAGGTGGAACTTACTTTGTTGACCAATCTGGTCAATATTACTACCAAGCAAATAATGATGAAACACCTGTCATGACACAGGTTCAAATTCAAGAAGTAGAAGAAGCAGATGTAAATAATGACGGAGAAGCACCTCAAGAAGAACAATACCATGAAATTGAAGAATTAGAAAATGTTGATGGTGATGAAGATGGTCAGGTAACGAGTAATGGAAATAATGAGGTTGTAATCAATTCTGGAGATGCGTATCAAACAGTTACTATTGTACCATCTGATACCAATCCTGGTGAAGTCAGTTATGTACTAATAGTTCAGCAACCTGATACTGAGGATAAGGAAAGCAAGCCAATAGCACGAGAAGGAACAGAAGGTGAAGAAGGAGAAGGAGAACAAGATCTTACAGTTTATGACTTTGAAGATAATGAAGATAATGAAGTACCTGTGGAATCAGAAGTAGAAGATGACAAAACTAAAATTGTAAAAATTTTACCTAAGAAATCCCAAACTGTTACTCAAGCTCATATGTGTAATTACTGTAATTACACCAGTCCAAAACGATATCTGCTATCACGACATATGAAATCACATTCTGAGGAAAGACCACATAAATGTAGCGTTTGTGAAAGAGGATTTAAAACACTAGCTTCTCTTCAGAATCATGTTAATACACATACTGGGACCAAGCCACATCACTGTAAATTTTGTGATAGTGCATTCACAACCTCTGGTGAACTTGTTAGACATGTTCGATATAGACACACACATGAAAAACCACATAAATGTCATGAATGTGACTATGCATCTGTTGAATTGTCTAAACTTAAACGAGAGAAACCATACGAGTGTGATTTTTGTCAAGCAAGGTTTACTCAGTCTAACAGCTTAAAAGCTCACAAATTGATACATAACGTTGGTGACAAACCAGTGTTTCAGTGTGAATTATGTCCAACTACGTGTGGAAGAAAGACAGATCTCAGAATTCATGTACAAAAATTACACACCTCTGATAAACCTTTGAAATGTAAACGCTGTGGAAAATCATTCCCAGACAGATATAGCTACAAATTGCATAGTAAAACTCACGAAGGAGAAAAGTGTTATAAATGTGATTTGTGTCCATATGCTTCTATATCCGAGCGCCATCTCGAGAGTCACATGTTAATTCATACTGATCAAAAACCATATCAATGTGATCATTGCTTTCAATCATTCAGACAAAAACAACTTCTCAAACGGCATTATAATTTATATCATAATCCTACTTATGTTCCCCCTCCACCACAAGAAAAGACACATCAATGCCCTGAATGTGAACGACCGTTTAGGCATAAAGGGAATCTTATTCGACATATGGCTGTTCATGATCCAGAATCATCTCTTCAAGAAAAGCAACAAGCATTAAAGATGGGCAGACAGAAGAAGATTCAAATTATAGATGGACAGAGAGTTGAGGTCATGACAGGTGATTTAGCTACTAAACTTAAAGGTTACGAAGATGAAGAAGAAGATGAAGAAGATATGATGGCAGTCGAAGGAAGTGATGGTCAACAATATGTTGTATTGGAAGTTATACAGCTAGCTGACAATCAAGGAACTGATCAACAAATGGCCGTAGTAGCCAGTGAAGACGGAGATTTGATGATGCAAGATCCTTTGAGTCAAGAAAGTGGGATTGTAACTGGTACAGGTGAAGAAGGAGATGAAGCAGAAGAAGAGGAAGAGGAAGAAGAAGAAGAAGAAATAGAAATGGATGAATTAAAAATAGAAACAGGAACGCCTATGAAATCTTCCTCTCAAAACACACAAAGTGATCCAAAATTACAGAAGGAGATGGAAACTTGTTTCGGTTTTGACGAGGAAGAGGAAGAAGAAGAAGGCGCCAATGGCAATATAAATATATTGCAGACAATTTCGTAA
Protein Sequence: MTTNVATIKLEEEQESVTEIQTYLETFNREIEGGQGEQLQHVQLQQVEGLSGGEEGGTYFVDQSGQYYYQANNDETPVMTQVQIQEVEEADVNNDGEAPQEEQYHEIEELENVDGDEDGQVTSNGNNEVVINSGDAYQTVTIVPSDTNPGEVSYVLIVQQPDTEDKESKPIAREGTEGEEGEGEQDLTVYDFEDNEDNEVPVESEVEDDKTKIVKILPKKSQTVTQAHMCNYCNYTSPKRYLLSRHMKSHSEERPHKCSVCERGFKTLASLQNHVNTHTGTKPHHCKFCDSAFTTSGELVRHVRYRHTHEKPHKCHECDYASVELSKLKREKPYECDFCQARFTQSNSLKAHKLIHNVGDKPVFQCELCPTTCGRKTDLRIHVQKLHTSDKPLKCKRCGKSFPDRYSYKLHSKTHEGEKCYKCDLCPYASISERHLESHMLIHTDQKPYQCDHCFQSFRQKQLLKRHYNLYHNPTYVPPPPQEKTHQCPECERPFRHKGNLIRHMAVHDPESSLQEKQQALKMGRQKKIQIIDGQRVEVMTGDLATKLKGYEDEEEDEEDMMAVEGSDGQQYVVLEVIQLADNQGTDQQMAVVASEDGDLMMQDPLSQESGIVTGTGEEGDEAEEEEEEEEEEEIEMDELKIETGTPMKSSSQNTQSDPKLQKEMETCFGFDEEEEEEEGANGNINILQTIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00730251;
90% Identity: iTF_00232134; iTF_00215873; iTF_00226759; iTF_00228839; iTF_00228137; iTF_00217899; iTF_00214540; iTF_00220748; iTF_00227437; iTF_00219282; iTF_00230836; iTF_00217240; iTF_00231482; iTF_00226076; iTF_00222685; iTF_00225422;
80% Identity: -