Bhae012968.1
Basic Information
- Insect
- Bombus haemorrhoidalis
- Gene Symbol
- -
- Assembly
- GCA_014825975.1
- Location
- CM026172.1:4339380-4344033[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.043 3.9 8.2 0.6 6 23 258 275 255 275 0.92 2 13 0.084 7.6 7.3 0.7 1 23 280 303 280 303 0.95 3 13 4.7e-05 0.0042 17.5 0.4 3 23 317 338 315 338 0.95 4 13 0.0078 0.71 10.5 0.7 3 23 351 371 351 371 0.98 5 13 8.3e-08 7.5e-06 26.2 1.5 2 23 415 436 414 436 0.97 6 13 0.0041 0.37 11.4 0.5 1 23 441 464 441 464 0.93 7 13 0.86 78 4.1 1.6 2 23 538 559 538 559 0.96 8 13 4.9e-05 0.0045 17.5 3.4 1 23 568 590 568 590 0.95 9 13 1.4e-06 0.00012 22.4 1.1 1 23 599 621 599 621 0.98 10 13 0.0048 0.43 11.2 3.3 1 22 627 648 627 648 0.95 11 13 0.00019 0.017 15.6 2.8 1 23 675 697 675 697 0.99 12 13 0.15 14 6.5 0.0 1 23 762 785 762 785 0.97 13 13 5.9e-07 5.3e-05 23.5 5.9 1 23 790 813 790 813 0.98
Sequence Information
- Coding Sequence
- ATGGCTGTGCCTAACAAGTGGGAGAATGCTTGTAGATTATGCTCAGAGGAGAAAAATGAAATGCTGTCGATTTTTGGTAACGAAGGTGTACAGCGTAAAGTGGCACAAAAGTTACGTGCTTGCCTGCCAGTTCTAGTGTACAAAACCGATCCACTGCCAAAGCAAATATGTCAGTTCTGTGCCGCCAGGTTGGACGACGTTTATGAGTTTAGAGAATACTGTCTGAGCGTTTACAAAAGCATGCACTTGAAGCTGTTAGCTTATAAGAACATTGAATCTGTTCAGATTTATTTAGAAGCAATGAAAAATTCTCCTGATCCCTGTCAGGCCCAACTATGGAGAGAAAAGGCTAGAGCACCACCACCATTAGTACCTTTGCCAGTTTCACTGCCAGTTGAAAGTCCATCAATGCCAATAGATATTAGTCAAGACCATCAAAATAGTTGCATTGAATCATTACCTGAATTGCCATGTGAAGTAGAGATCAAAGAAATGACTACAGAACCAATATTGGGAATAGGTGTTAATGTATATGAACCATCACATAAAAACAATATAGAAAATGAACTATATAATAAGTTAGATATAATAGTGGAACAAAATACAAGTTTATTAAAAGAGGAAAGTGACTCAAGACAAGAAATACAGGTAAAAGAAGAAGAAAAGAGGACAAGTATTTTAGAACAAGTACTAATGGGTAGTTTAACAATGAATGATAGGAAGGACTTAAATTCAGAAACAAAGCTATCCTCTAAGTGGTGGTGTGCTCCTTGCAATAGTTATTATAAAACAAAGGAAAGTTTAATGAAACATATGCAGTTACACTGTCCAAGAAAGTATAATTGCAGGAAATGTTCTGCTTGTTTTGAGTTGGTAGAAGATTTGGCTAAACATGAAGCTACTAATCATTTAAAAGTAACATTAGATTTTGATAGAAGTGTTCTAGATTGTGACCAATGTGATAGGCAATTTGTTAGTTGGGAGATGCTGAAGAAACATAGATTACGTGATCACTTAACTCAAATAAATGAAGTTGGGTCTAATACATGGTGCTCTTTATGCAATAGATTTTTCCCAAGTATGGAAACTTATCAAAGTCATATTCAATTACATGAGGTCAGTAATTACACACCAACGAAAATATTACACCTAACGAATCAACAATCGGCGAAGGTCCTCAAAAGTGAAGAACCTTCAAAAGAAGTGAAGAGAGAACATTTTACAGACGCTACTAAGTCACTTACGTGTCCTACTTGCGGAAAAGTTTGTACTCAACAAAGTGCGTTATCAAATCACATGCGTACTCATGAACCAAAAAGACATAAATGTGATATATGCGGACGATCATTTGGGCTTTTCATACGTCTAGCAGCACATAGAATGAGTGAACACAGTCAGCAACCTACAATGTCACCTGTAATGGCTAGCGTTGAACAGGAAGAAGCATTAAATGCCGAAAGGGAAGCTAAAGAGGCGAGAGAAGCTAGAACTCGTGCATCAAGAACTAGAACATATTCAGAGATGATAGAAAGAGAAGATATTCCTAATCATGAAGAACCACCATTAAAAAGAAACGTTCCATTAAATACCAATGCATTTAAAAATGTGGCAAGATGTGGTATCTGTTTACAGTGGTTCAGTGATCACACAACAATGTTAACGCATTTACAGACACATTCAGATAATTTCACTTGTAAAAATTTCATGTGTCATATATGTAAAAAATCTTTCAAGGAAAAGTGGCAATTATTTAGACACGAAGTATCTCATAAACGAAATGAATCTGCATCAGTATATATATGCACAGTATGTAACAAATCATTCGTAGATAAAAATGCATATAAAGTACATCAGAAAACGCACATTGTTGATAAAACATATCACTGTCCTAAGTGTAATAAAATATTTTTTAAAGAAGTATCTTTGCTAACTCATCAATGCACGGCAGAAATTGTACTTGGTAAAAAAGGAGTATCCTCAAAGTCTTCGCAAAAGTCTGCGTCGTTGAGTAACAGTAAAAGATATAAATGTTCCAAATGCAATGCGTCTTTCAGTAGCTTTCAATCGAAAAACTCTCATATGAGAGTGCATATGGAAAGTTCACATACAACGGTGCGAAAACAAGATTTAAAGGAGGAGTCAGAAGAAGAAAAAACTATGCCAAAATTAACTCCTGAAACATCATTGGAATATTCGGTTCCTCCTATTGAACCAAAAATAGAAATAAACGAGGAAAGTACACCACCTCCTGTTAAACGTACTCTAATCAGGACAACTGGCGGGTATCGGTGCGGAGTATGTCAGTCTCCATTTGTTTTACGAGAACTAGCAGTTGCACATTTAAGATCTGCACATCCTCTAATGCCATATCAGTGCCCTTATTGTAAGAAACGATTCACCACACAATATACATTCACGCATCATATTAAGACAGATCATCCTGATGAGCACGAGAATTGA
- Protein Sequence
- MAVPNKWENACRLCSEEKNEMLSIFGNEGVQRKVAQKLRACLPVLVYKTDPLPKQICQFCAARLDDVYEFREYCLSVYKSMHLKLLAYKNIESVQIYLEAMKNSPDPCQAQLWREKARAPPPLVPLPVSLPVESPSMPIDISQDHQNSCIESLPELPCEVEIKEMTTEPILGIGVNVYEPSHKNNIENELYNKLDIIVEQNTSLLKEESDSRQEIQVKEEEKRTSILEQVLMGSLTMNDRKDLNSETKLSSKWWCAPCNSYYKTKESLMKHMQLHCPRKYNCRKCSACFELVEDLAKHEATNHLKVTLDFDRSVLDCDQCDRQFVSWEMLKKHRLRDHLTQINEVGSNTWCSLCNRFFPSMETYQSHIQLHEVSNYTPTKILHLTNQQSAKVLKSEEPSKEVKREHFTDATKSLTCPTCGKVCTQQSALSNHMRTHEPKRHKCDICGRSFGLFIRLAAHRMSEHSQQPTMSPVMASVEQEEALNAEREAKEAREARTRASRTRTYSEMIEREDIPNHEEPPLKRNVPLNTNAFKNVARCGICLQWFSDHTTMLTHLQTHSDNFTCKNFMCHICKKSFKEKWQLFRHEVSHKRNESASVYICTVCNKSFVDKNAYKVHQKTHIVDKTYHCPKCNKIFFKEVSLLTHQCTAEIVLGKKGVSSKSSQKSASLSNSKRYKCSKCNASFSSFQSKNSHMRVHMESSHTTVRKQDLKEESEEEKTMPKLTPETSLEYSVPPIEPKIEINEESTPPPVKRTLIRTTGGYRCGVCQSPFVLRELAVAHLRSAHPLMPYQCPYCKKRFTTQYTFTHHIKTDHPDEHEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01123225;
- 90% Identity
- iTF_00684328;
- 80% Identity
- -