Bhae000292.1
Basic Information
- Insect
- Bombus haemorrhoidalis
- Gene Symbol
- -
- Assembly
- GCA_014825975.1
- Location
- CM026164.1:3097238-3098353[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0016 0.15 12.7 0.1 2 23 48 69 47 69 0.97 2 10 1.4e-06 0.00013 22.3 1.8 1 23 81 103 81 103 0.97 3 10 3.5e-05 0.0031 17.9 0.9 1 23 109 131 109 131 0.98 4 10 5.1e-06 0.00046 20.6 0.1 1 23 135 157 135 157 0.98 5 10 0.00028 0.025 15.1 0.3 1 23 163 185 163 185 0.97 6 10 3.8e-05 0.0034 17.8 5.4 1 23 196 218 196 218 0.97 7 10 3e-07 2.7e-05 24.5 0.2 1 23 227 249 227 249 0.98 8 10 1.6e-06 0.00014 22.2 1.1 1 23 255 277 255 277 0.98 9 10 1.3e-05 0.0011 19.3 5.3 1 23 283 305 283 305 0.98 10 10 6.2 5.6e+02 1.4 4.0 1 13 311 323 311 324 0.89
Sequence Information
- Coding Sequence
- ATGGTACCTCAGGATGAGCAAGAATGCAGCCCGAACGATGAGATGTTTGATCACGAAGATACAGAGCAGCTGCTCGTCGCGAATCGTTTGCATGTTCCGAACGTGGGGAAAGCGGAGATAATCATCGCTGATGATATCGTGCAGTGCAATCTCTGCGGAGATGGTTTCGTTTCCGAGCATGCTCTTGCTCTACATTTAAAAATGCACGAACAGGACGAAGCACAATTACAGGAGGATCAGTTTGTTTGCGAGCACTGTGGTCGCAGTTTCACAACGATCTCTGAATTTAAAGAGCACCAATCAGAGCACGAAACGGATGAGAGATACGCTTGCGAAATGTGCGACTATGTTACAGAGCATAGAGAGAATCTAATCCTGCATCAGAAACGTCACAATAACGAGTACGAATGCGACATTTGTGGTGCCAATTTCGTTTCTTCTAGCAGCTACGAAGAGCATCAATCCATGCATTCGGATGAAAAACCGTTTCAATGCGAAATATGTAGCGCTCCTTTTCGATATCGTCAAGGTTTGAGATTACACGCGAAGCTGCATCAGCCCGATTACGTACCACCTCAGAGAAAACACCATTGCGAGCTCTGCAACAAGCGTTTCTCCAGGAAGCAGGTATTATTGGTACACATGAAGACGCACGGAAACGCAGGCTCCCAGAACGAATACATCTGCCCAGTTTGTGGCAAAGCTGTCTCTAGTAAGACGTACTTGACCGTACATTTGCGCAAGCATACAGGAGAGAAACCGCATGTCTGCGACCTCTGCGGTAAAGGGTTTATCTCGCAGAACTATCTGAGCGTTCATCGACGCACGCATACTGGAGAAAAACCACATAAGTGCACCCACTGCGAGAAACGGTTTACTCAACGAACCACTCTGGTGGTGCACCTCAGGGGACACACCGGAGATCGGCCATACCCTTGCACCTGTTGTCATAAATCTTTTGCCTCGAAAACGATTTAG
- Protein Sequence
- MVPQDEQECSPNDEMFDHEDTEQLLVANRLHVPNVGKAEIIIADDIVQCNLCGDGFVSEHALALHLKMHEQDEAQLQEDQFVCEHCGRSFTTISEFKEHQSEHETDERYACEMCDYVTEHRENLILHQKRHNNEYECDICGANFVSSSSYEEHQSMHSDEKPFQCEICSAPFRYRQGLRLHAKLHQPDYVPPQRKHHCELCNKRFSRKQVLLVHMKTHGNAGSQNEYICPVCGKAVSSKTYLTVHLRKHTGEKPHVCDLCGKGFISQNYLSVHRRTHTGEKPHKCTHCEKRFTQRTTLVVHLRGHTGDRPYPCTCCHKSFASKTI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00118162;
- 90% Identity
- iTF_00215862;
- 80% Identity
- -