Bdif002090.1
Basic Information
- Insect
- Bombus difficillimus
- Gene Symbol
- -
- Assembly
- GCA_014737525.1
- Location
- JACXIT010000094.1:151486-157188[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.13 12 6.8 0.3 2 20 100 118 99 120 0.92 2 13 0.0021 0.19 12.4 0.3 1 21 126 146 126 147 0.96 3 13 0.2 19 6.1 9.3 2 23 158 180 157 180 0.91 4 13 9.4e-07 8.8e-05 22.9 2.2 1 23 475 498 475 498 0.97 5 13 1.5 1.4e+02 3.4 0.3 5 23 505 524 504 524 0.94 6 13 0.00063 0.059 14.0 2.0 2 23 531 552 531 552 0.97 7 13 0.88 83 4.1 3.7 1 20 579 598 579 600 0.89 8 13 0.0044 0.41 11.3 1.9 1 22 701 722 701 722 0.96 9 13 0.0022 0.2 12.3 1.3 2 23 730 752 730 752 0.93 10 13 0.0017 0.16 12.7 4.3 1 23 762 785 762 785 0.96 11 13 3.3 3.1e+02 2.3 0.2 2 19 805 822 805 824 0.88 12 13 3.4 3.2e+02 2.3 1.3 1 23 832 855 832 855 0.80 13 13 0.011 0.99 10.2 7.5 1 23 866 889 866 889 0.94
Sequence Information
- Coding Sequence
- ATGCAAATAGCTCGAGTGTTAGTTTACGTACGCCCTATTGATGCAATCTTCGTGGATATAAAATTGGACAGCAAAATGGATCCTTCTGAATATGCGATAACAATAAAGGAAGAGCCAATCGATCCAGAGATCTGCGATGATTTGTCGCCAGTTGATACGAATACAGGGAATGAGAATGAAACAGCGACGTTTAAAAGTGAATCCGCGTTTTCTCAAGAAAGTACGTATTTAGAAAATAACAAATCGGATCCTGATAAACGAAAAAGTAAACGTAAGATACCTTCAAACAACAGAATAAGTTGCAATGTTTGTTTGTTAACTTTTCAAACAAAAAATTTATTAAAACTGCATAATAAATTATATAGCTGCAATGTATTTAAGTGTAATAATTGCACGGCGATCTTCAATATGCGTACTTCGTTGATACGTCATTTAAAGGCGCGATGTTGTACGAAGAAATTGGCTGGATGTAGATGTAATTTTTGTAATCGAAGGTTTTCCTATAAAAGACATGTCCAATCTCATTTATTCCATGTGCATGGGAACGCAATATTTTCTGATGAGAGCAAAATTACGAAAACATCTCCTGAATCGTTAGGAAAGTCGAATCATTCGGATGGTATAGTCATGACAGAATCAAATACTTCACACAAGCCCTCTCCAAAAAACGTAAATAGCTCGATAAATATATCTTTGGAACTATCTAATAGTTCGAACAATACACCCAGCAAGGGTTCGAGCAGCAAGATCAAGTCTACGCATCCGAAATTGTTAAACGATTCGCATGATACACCTTCGAAAAGGATGAAGCAGACCGTCCTTACAGACTTCACATCGCTGTACAAAGACAAACCGAATGACAAATGGGTTAGCCCGGAAAAAGTTATCGATACGGAGAATATTCCTGTTACTACGACTATTGTTCCAACTTCGACGCTCGAGACATTTAGTAACAAGACATCAACGGCTTCGGAAGTTATTCAGATGTCCACTTCTGTTAAGCGAATCGAATCTCCTGTTAGGAAAAGACCATTTGTTCAAATTCATGTGAATTTCAAAACAATGATATCTTTATTAAGGAACGAAATAAAAGCTGAATCTGAAAGCTCTAATACCTCGCGCAATATGTCTTACAACCTTAGGTCAGTGAAAAGATGTTCTTCTTCTTTATATGATTTTTACGATTTATTGGAGTTTGAGACCTTTGGAAGATCGGGACAATCTTTTAAAAGAAACAAGTCCCGCGATATATTTAACCAAAGTAATAGATCTGCGCTCGAAGCTAAGTGTAAAGAATGTGTGGTCCGTTTGGAGAAATGCGACAAATTCTTGGAGCCTACCAGTTTTGTGTCAAACGAAAACGAAGACGCTTTCAAACAAGCAGTATCGAAAAATATGAAAGAGGTCAATCAGCATAAAATATTTCAATGTCAAATCTGTAAAAAATCGTTTTCTTTGAAGGAGAACCTGCGCGAGCACATGAAATTGTTTCATGCGATTTACATGTCGAGCATATGCAACGCGCGTTACACGTCCATGAATAAGTTACTAACTCACTATCTACGTCAGCATGTTGTGTTTAAACGAAGGAAATGTTGCGTGTGTTATGAGAAGTTTGAGACGTCGGCATTGTTGAAGCGGCACATGATTTTGCACTGTTTGAAGACCATAAGATCAAAAAAAGACGCTCTACCGGTTGATGTTGAAATAAATTGCAATGCATCCAAGAAACAACACAAATGCAAAGGTTGTCGCAAACGATTTTGGCTATACTCATGTTTGAAACAGCATGAGAATGTATGTGGCCGAATGAAAGTCTCGATACATAAACAACGTGTACCTCGTGTAAACCATTTGTCTCGGTCCTTGAAAGAATCAAGTGACATGGAATTCGGCATAGTACAGACACCTGATTTGGAACAAACGTTGGATGTTCCGGATGGAACGGCGAGATCTTTGGAAAATTATTCAGCTCCCAGTACGCTTATTACGGATGATACTTTCTCTTCGTCATTCGATACAATTGCAAAGAACAAAAGGTTACTTAATGGAATTGCACGCGTAGAGGGTTACCAAGCGAACAAGATGAACGGAACAAAGTTTCCTTGCGTTACTTGTGGAACACAATTCCAAACATTTCAAAATTTGTGCAGACACGAGCGCACCTATTGCCAAACAGCCACGGAAAAGTGTAACGTTTGTAACACGATGTTTTCCACTAAAAGATTATTACAGTTTCACATGCTTGCTACTCATACGCCTTCGTGCTCGATAAACTACAAATACTTTTGTAAGTTCTGTAATCAAGGATTTGTTAAGAAATCGAATTTTCAAATTCACGAACGACACTTGCATATTGCGCAGAATCCTAGACCGGTGCTGAATTCCAATTGCGTTTCGAAAGATAAACCAGTCTGTAATATATGCCATTTGTTATTCGAATCCTACGAACGTTTAGTCGAGCATAACACGTATTATTACAAGGGCAATGATTTTTTATGCGCGATATGTGGTAAGTTGTTTCAAGGAATGTACAAGTTTGATCATCACAACAAGTTGGAGCATTATCCGGACGAACCATGGAAATTGTACCCTTACAAATGCGATACTTGTAACGAAGGCTTCAGCCACGAATCACATTTCCACGCGCATAAGCTACACGTTCATTCGCACGATTTGCCCGCTGACGAGGCACGCGACCGCGATACATCGGATCAGACTTTTCGCATGTGTTCATGA
- Protein Sequence
- MQIARVLVYVRPIDAIFVDIKLDSKMDPSEYAITIKEEPIDPEICDDLSPVDTNTGNENETATFKSESAFSQESTYLENNKSDPDKRKSKRKIPSNNRISCNVCLLTFQTKNLLKLHNKLYSCNVFKCNNCTAIFNMRTSLIRHLKARCCTKKLAGCRCNFCNRRFSYKRHVQSHLFHVHGNAIFSDESKITKTSPESLGKSNHSDGIVMTESNTSHKPSPKNVNSSINISLELSNSSNNTPSKGSSSKIKSTHPKLLNDSHDTPSKRMKQTVLTDFTSLYKDKPNDKWVSPEKVIDTENIPVTTTIVPTSTLETFSNKTSTASEVIQMSTSVKRIESPVRKRPFVQIHVNFKTMISLLRNEIKAESESSNTSRNMSYNLRSVKRCSSSLYDFYDLLEFETFGRSGQSFKRNKSRDIFNQSNRSALEAKCKECVVRLEKCDKFLEPTSFVSNENEDAFKQAVSKNMKEVNQHKIFQCQICKKSFSLKENLREHMKLFHAIYMSSICNARYTSMNKLLTHYLRQHVVFKRRKCCVCYEKFETSALLKRHMILHCLKTIRSKKDALPVDVEINCNASKKQHKCKGCRKRFWLYSCLKQHENVCGRMKVSIHKQRVPRVNHLSRSLKESSDMEFGIVQTPDLEQTLDVPDGTARSLENYSAPSTLITDDTFSSSFDTIAKNKRLLNGIARVEGYQANKMNGTKFPCVTCGTQFQTFQNLCRHERTYCQTATEKCNVCNTMFSTKRLLQFHMLATHTPSCSINYKYFCKFCNQGFVKKSNFQIHERHLHIAQNPRPVLNSNCVSKDKPVCNICHLLFESYERLVEHNTYYYKGNDFLCAICGKLFQGMYKFDHHNKLEHYPDEPWKLYPYKCDTCNEGFSHESHFHAHKLHVHSHDLPADEARDRDTSDQTFRMCS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -