Bdif014880.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bombus difficillimus
Gene Symbol
-
Assembly
GCA_014737525.1
Location
JACXIT010000001.1:780416-782839[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 8.8e-06 0.00083 19.8 3.6 2 23 281 302 280 302 0.97
2 15 8.6e-05 0.008 16.7 3.6 1 23 308 331 308 331 0.97
3 15 4.1e-06 0.00038 20.9 1.4 2 23 412 433 411 433 0.97
4 15 2.2e-05 0.002 18.6 2.0 1 23 439 461 439 461 0.97
5 15 0.00071 0.067 13.8 0.3 1 23 467 489 467 489 0.97
6 15 2.4e-07 2.2e-05 24.8 0.9 1 23 504 526 504 526 0.98
7 15 3.3e-05 0.0031 18.1 0.5 1 23 532 554 532 554 0.94
8 15 8.3e-06 0.00078 19.9 2.2 1 23 560 582 560 582 0.98
9 15 0.00069 0.064 13.9 0.2 1 23 588 610 588 610 0.99
10 15 3e-06 0.00028 21.3 0.3 1 23 616 639 616 639 0.94
11 15 1.5e-05 0.0015 19.1 1.3 1 23 645 667 645 667 0.98
12 15 0.00034 0.032 14.9 4.7 1 23 673 695 673 695 0.98
13 15 5.1e-06 0.00048 20.6 0.2 1 23 701 724 701 724 0.96
14 15 3.4e-06 0.00032 21.2 0.6 1 23 730 752 730 752 0.96
15 15 3e-06 0.00028 21.3 4.5 1 23 758 780 758 780 0.99

Sequence Information

Coding Sequence
ATGAATTCACTTTATAATACCACAGACAAAAAGTTGTATCATAGAGGACAAATTGATGTAATAGATATGCCAATACAATTAACTTGTAATTACAAGTATTTCCTTGTCTACGAGGATCAAGTATCCAGATTTGTTGTTTTAAAAGGTTTACATGGAAACACAGCAAATGAAGTAGCTGTGAAACTGTTAGACATACTGGCTATTATCGGAGCACCACAGGTCTTACAAAGCAGCAATGGACGCAAATTTGCTGAAGAAGTTGTGCAAGAGATACGTCTTTTGTGGAAAGATTTCATGATACTTCATGGAGAAATCACTGAGAACAGTGAACAGAGTAGAGATTTTAAAACCTTACTTGAATGTTGGGTAGAAGAAAATCCAACGAAAACATGGTACGAAGCTTTGAAACATATACAAATTTTTCAAAATTCAACATTTCGTTGTGAAAATGGAAAAATTCCATATGATATATTATTTGGGAAAAATGTACATGAAGAATTCCAAAAACAAACTAATCTAATAAATTTAAGAGATAATGTATGGACAGAAGAAGAATGGATTAGCCTCTTACCCAACAAAGAAGATGAAGTTAAGGAAGAAGATATGCAGCAGCTTATAGATGAGCCCGCCTTTGCAAACAGAGATGTAGATAGCTTAAATGATTGTGAGAGTGAAGATTCTTGCAATGAAGTCAGGGGTGAATTTCAAAGAAGCACTCCTGGTTTTAATTTTGTGAATGTTAAGAGTGAACCTTTGAACATGCATACAGAAGATTCAGTATTTGAGGATGAATTGGGAATAGATGACAAGGTATCAAATGCGGAGAATCAAATCAATTTAAAATGTAAAATCTGCAAGAAACAATACATGAAACCTGGCCACTTAAGAAATCATATGAGAACACATATAAAGGGGAAAAAGTTCGAATGTAAACTATGCAACAAAACATTTCACGTTCTAAGTTTATATGAAAAACATATGAGGCAATCTCATAGACAAAGTAAATTATCCAGTCTAACCAGAAATAGAAGAAGTAAAGACTCTCAAGATGAAACAACATTAGACACGAAAGCATCTAAATTGAGAAATTTCTCACAATTAAATGCCAATGAAACACAATCAAATGAAGCAAATGATTGTACAAAGGCAACAAAGAGTTTAAGTCTCCTCAAGGAAAGGAAGAAAATTGCTGCAGACAATCGTCCAATGAAAATAAATGGAGATCCAACTTTGGAATGTTCATATTGTAATCAAAAGTTTAACTTTCCTAGTGTATTAAAAAGGCATATGCGATCTCACACGAATGAAAGACCCTACATTTGTTTAATTTGTAATAAGAGTTTTAAGCAATTGGGTCATCTTAGCCAACATTCATTAACGCATAAAGATTATCGGTCTTTCCATTGTGCGGTTTGCGGAGTGAAATTCGATTCTTTAGGTTCGCTGAAGATCCATGCTCAATCGCATAAAGGACATTACATTTCAAAAACTAAAGAGACTTTCCGTTTGTTCGAATGTGATAACTGTAAAAAGGTGTTTACCACCAAAAGTGTTTTGGAACGGCACATACTTACTCATTCTCATGAGCGTCAATTCCCATGCATCATTTGTGGGAAAAGATTCAAACAAGCGGGACACGTGAAGTCTCATATGTTGGTACACACGGGGGAACGAAAATTCGAATGTTCGGTCTGCAAAAAGAGATTTAGTCTTTCGAATTCTTTGAAGAAACATATGTATGTTCACAATGGAGAAAAACCTTATCAATGCGATGTATGTGGTGCACGGTTTCTTGAAAAAAGAAATCTAAACGGTCATCTAATGACTCATACGAACGAGCGTCCGTTCCGCTGTAAAATTTGCGGAAAAAGATATACTTTAGCTGATACTTTGCGTCGGCATATAAGTGCTGCACATGAAGATGGGCGCACCTATCAGTGCGAGATTTGTGCGAAAATGTTCAAGCAGCTCGCTCATCTGTCCGTTCATAAAAAGGTACACAACGACGAACGCCCATTTCAGTGTCATTTATGCGAGAAAAATTTTAAACATAAAAACGTGCTTAAATCTCACTTGGCCATTCATGCAAATGTAAGGCCATTTGAATGCGATGTATGCAAAGCTACATTTGTAAGGAAAACAAATTTACAAACCCACATTGCATCAGCTCATATGAACGAAAGACCATACGTTTGTACTATTTGTGGAAAACGGTTCAAACAGATTAGTCACTTAAACGGTCATGTAGTAGTGCATAGCAATTTAATGCCTTATCAATGCGATTTCTGTGATCGACGATGTAATAGACTCGATAATCTAAAGAAACATATGCGTCTTCATACGAAAAATAAAGAGTAA
Protein Sequence
MNSLYNTTDKKLYHRGQIDVIDMPIQLTCNYKYFLVYEDQVSRFVVLKGLHGNTANEVAVKLLDILAIIGAPQVLQSSNGRKFAEEVVQEIRLLWKDFMILHGEITENSEQSRDFKTLLECWVEENPTKTWYEALKHIQIFQNSTFRCENGKIPYDILFGKNVHEEFQKQTNLINLRDNVWTEEEWISLLPNKEDEVKEEDMQQLIDEPAFANRDVDSLNDCESEDSCNEVRGEFQRSTPGFNFVNVKSEPLNMHTEDSVFEDELGIDDKVSNAENQINLKCKICKKQYMKPGHLRNHMRTHIKGKKFECKLCNKTFHVLSLYEKHMRQSHRQSKLSSLTRNRRSKDSQDETTLDTKASKLRNFSQLNANETQSNEANDCTKATKSLSLLKERKKIAADNRPMKINGDPTLECSYCNQKFNFPSVLKRHMRSHTNERPYICLICNKSFKQLGHLSQHSLTHKDYRSFHCAVCGVKFDSLGSLKIHAQSHKGHYISKTKETFRLFECDNCKKVFTTKSVLERHILTHSHERQFPCIICGKRFKQAGHVKSHMLVHTGERKFECSVCKKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLMTHTNERPFRCKICGKRYTLADTLRRHISAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHIASAHMNERPYVCTICGKRFKQISHLNGHVVVHSNLMPYQCDFCDRRCNRLDNLKKHMRLHTKNKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00684907;
90% Identity
iTF_00225376;
80% Identity
-