Bdif019419.1
Basic Information
- Insect
- Bombus difficillimus
- Gene Symbol
- lola
- Assembly
- GCA_014737525.1
- Location
- JACXIT010000058.1:258220-261308[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.3 7.4e+03 -3.1 0.1 4 20 102 118 101 120 0.74 2 2 7.6e-09 1.7e-05 24.6 0.0 9 40 394 426 393 431 0.85
Sequence Information
- Coding Sequence
- ATGGAAGACGACCAGCAGTTCTGCCTTAGATGGAATAATCATCAGAGTACATTGATCCAGAACTTCGACACGCTTCTCGAAAGCGGGACGCTTGTCGACTGCACATTGGCAGCAGAGGGGAAATACCTGAAAGCCCATAAGGTAGTTCTATCTGCGTGCAGTCCTTATTTTGAGGGGCTCCTCAGTGAACATTATGACAAGCATCCTGTCTTTATACTCAAAGATGTTAAGTTTAAAGAATTAAAAGCAATGATGGACTATATGTACAGGGGAGAAGTAAATATCTCCCAAGACCAATTGGCAGCACTCCTTAAAGCTGCCGAGTCTCTGCAAATTAAAGGTCTATCGGAAAGTAAAACAAGTGGTAGCAGTAAGACGGATTCTAGGCAACAAAAGGTCGTTCCGCAAACATCACAGCCCGACATTCCAATTTCGTCTTCCGGTCTTACGATAGAAAAGAACAAAGTTCCTAGGCAGGGTGTGTCGCAAGGTCCCCTGGGGGATTTACCCGAAGACTCTGCCAGTCCTCAAATACCGAAGGGTTTGTCCTCTAGGGAAGGTTCCCAAAGTCCCACATCAAGGAAAAGAAAAAGATTTAGACGAAAAAGTATAGGTGATGATAATTCAGTAGAAAATCACGAAGCTTCGAATTCAAGTGACATGCCTCAACAAATGGGTGTCCCCGCGCTTGGAATTGCACCCGTAGCAGATGAAAAATCACATGCAGACCCCACAGATTCCATTGGCAGGTCAGCCTTAATGACGCAGCTGACGAAACCTGCCGATGAAATGTTACAGTTGCCGCTAGAAAAACCCGAACCAAGTGATAATCTCATTGAACCAAAGTCTGAATATCTCGAAGATCCAGAAGAAAGCGTCGAAGATCTGACGCTGGATGACGACATGAATGATTTGAACGAGATGGAACAAGATAACAATAGAGCCGGCCCATCCCACGACCCCTCCCAGCATCCTGGTGGGGGGGCGGGAGCGCGGTCTCGGTCGAGAGGGAATTTGATGGGTGGTGATGGCGGTGCCCTCTGGGCGTCTCATTTCCTCGAATGTAAAAAAGGGCCGAATATGAGGCGGCCGCGCACAGATGTTGACGTAGGCGCGTTGCTTAAATCGCTGGAAAAAAAACAGGGCAGAAAGTATAGTTTAGACTCGGTTAAAATGTCCCTGGATGCAATATTACAGCAGGGAGTTAGCACCACTCAGGCATCAGAGATGTACGGCATTAATCGTTCAACCCTGCAATTCTATTTGAAAAAGTTGAACGTCGTCAGGAGGAGATGGAGACAACAACCTAGTAACCTGATCCAGCCTAGACAGCCTTAG
- Protein Sequence
- MEDDQQFCLRWNNHQSTLIQNFDTLLESGTLVDCTLAAEGKYLKAHKVVLSACSPYFEGLLSEHYDKHPVFILKDVKFKELKAMMDYMYRGEVNISQDQLAALLKAAESLQIKGLSESKTSGSSKTDSRQQKVVPQTSQPDIPISSSGLTIEKNKVPRQGVSQGPLGDLPEDSASPQIPKGLSSREGSQSPTSRKRKRFRRKSIGDDNSVENHEASNSSDMPQQMGVPALGIAPVADEKSHADPTDSIGRSALMTQLTKPADEMLQLPLEKPEPSDNLIEPKSEYLEDPEESVEDLTLDDDMNDLNEMEQDNNRAGPSHDPSQHPGGGAGARSRSRGNLMGGDGGALWASHFLECKKGPNMRRPRTDVDVGALLKSLEKKQGRKYSLDSVKMSLDAILQQGVSTTQASEMYGINRSTLQFYLKKLNVVRRRWRQQPSNLIQPRQP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01418424;
- 90% Identity
- iTF_00217825;
- 80% Identity
- iTF_00217825;