Bdah011470.1
Basic Information
- Insect
- Bombus dahlbomii
- Gene Symbol
- -
- Assembly
- GCA_037178635.1
- Location
- CM074109.1:12157576-12163374[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 1.1e-06 0.00011 22.8 2.3 1 23 137 159 137 159 0.98 2 16 0.0051 0.48 11.3 2.8 2 23 165 186 164 186 0.96 3 16 0.00028 0.026 15.3 1.5 1 23 193 216 193 216 0.97 4 16 3.9e-06 0.00037 21.1 2.3 1 23 222 245 222 245 0.93 5 16 0.00018 0.017 15.9 5.5 2 22 251 271 250 275 0.92 6 16 2.1e-06 0.0002 21.9 2.7 1 23 308 330 308 330 0.98 7 16 1.9e-05 0.0017 19.0 0.5 1 23 334 356 334 356 0.97 8 16 6.2e-05 0.0058 17.3 0.9 1 23 487 510 487 510 0.97 9 16 1.4e-05 0.0013 19.4 5.0 1 23 516 538 516 538 0.98 10 16 0.012 1.1 10.1 7.6 1 23 547 570 547 570 0.94 11 16 0.00093 0.087 13.6 1.2 1 23 576 598 576 598 0.95 12 16 1.2e-05 0.0012 19.5 2.4 1 23 603 626 603 626 0.96 13 16 0.0008 0.074 13.9 0.9 1 23 632 654 632 654 0.98 14 16 6.2e-08 5.8e-06 26.8 0.7 1 23 658 680 658 680 0.99 15 16 0.00072 0.067 14.0 7.4 1 23 686 708 686 708 0.99 16 16 5.2e-05 0.0049 17.6 3.2 1 23 714 736 714 736 0.97
Sequence Information
- Coding Sequence
- ATGTTTGATGCTGGTTGTCTTCGATTCGTTCAACAGACTAATGTAAGTACTCTGTACAGCGTAGATATACATTTAATGTCGACACAGCGTGATCCGCTCGAGCAAACGTACCTCGTGGTGCAAAACGTCGACAAATACTTCCTCCTTCCCATGGAGCACAAAACGTCGGCACAGAAACACGAAGAAGAGTGTATTACTGGAGATATCACCATCAAGTTGGAGGAACAAGACATACCCGAAGACACGACCGAACAACAGCTAATCGAATCGCCTGAGCGAAAAGATCCTCAAATTGACGAAACTGCTCAGGTACATACGAATCTATCCGTTCAGACACCTGTACAATTTTCTCAGTGGTTGGACCAATGTTCCAATGGTTCTGAAAGTATGACGAGCAACGAGGAAACGTTTACTTGCGACTACTGTTCGAAGATTTTCAGGAAGAAGTACGCATTGCAGAGGCATTTAGAGACTCATAGTAACGCACGGATGGAATGTTCGGTATGCCATCGACTCCTAAAGACGAAGAAGACGCTGAAGCTTCATATGATGCTGCACGAAGATACCGGTAAAATATTCGAGTGCTCGGAATGCGGCTTTATGTCGAAACGAAAGCAAAGTATGACTCGTCATCAGATCAGGATGCACTCGAAGATCGCCGATTACAAATGTCCACTTTGCCCGAAGACGTTTAAATTTAACGGTGACCTTAAAAGACATCATGAAGCGAAACACGTGGTCGACCCATGTTACTGCGAGATTTGTGGGAAAACGTATCGGAATAATCATTTTCTTCGGAAGCACCGGCGCATATCCAAGACACATAGAAACGCTTACACTCGTGTATGTTACGGACCAATTAGGGGTAATCAAAACATAGAGTGTGCGACCTCGCAAAACAAGGGTAAAGTGAAGCGAGTATTCAATTGCTCCAAGTGCAAATGGCGATTCAGCAGCTGGAGGTTACTAAATAAGCACATGCAACGACATCTCCTCATCTTTAACTGTGACATTTGTGGAGCCGTGTTTAAGTATAAGGCTTCGTTTTTGAAGCATCAAGAATCGCACAAACAATCTGAACAGAAACCAACGCAGCACTTAACCCTGAAGAACAAAGCCGTCGCTCCTAAACAACCGAAAGACCAATTAAGAGCTTCTCGCAAACCATCGAGCATTCTTCAAAGAAGAATCGCGTTTCGAGCTTCGAAGAACCTCTGCAAACGCAGAAGCAACGGGCGTTTGAACAACTCTTCTAGTCACGCAGAAACAAGAAGTATTTCGACCAATAACACAAACTCCAAACATAGGAAAATAAACGACGACGACACGACTTCGTCGAAAAATCCTACGAAGAAAAAGTTGTCTTTAAATTTCAACAATTGTTCGaatcaattacaaaataacgaGAAACAAAGTACACAACAAGAAGATCTATATAAGAAACTCAACGACGGTACTTATACCTGTGATATCTGCCAAACGACCTTCGAACAGAAGAGCAAGATCCTCCGTCATATCATCAGCAAGCACAGCTTCCACCGTCCCTTCAAATGTTCAACTTGCGACAAAACCTTCAAGTACAAGTGCGACTTGAAAGCTCATCGTCTAATCCATCAAGACGTCGACTCCAGTTTATTACATTGTTGCGACAAATGTGATTATCGTACGAAAACGAAGAACAATCTCAAGTCCCATTACATTAGAAGACACACGGACGATTATAAATTCGCGTGTGAACACTGTGGGAAGCGTTTCAAAATGGAATGGGACTTGAAATTCCACATTGGAACTCACAGCAATTCGCAGCACATGTGTGACATCTGTGGAAAATTTTACACGAGCAACTATTCTTTGTATAAGCACAGGAAAGTGGCTCACTTGAACGACTATAAGTTCCAATGTAACGTTTGTAATAAAAGGCTCTTGACACAGGAGAACTTGGACAATCATATGCAACAACACAGTAGAACGTACGAGTGTAAAGACTGTGGAAAGGTATTTGCATCAAAAAGGTATCTAGCGACTCATATGACTACGCATACAGGCGTGAAACCGTATACTTGTCATATTTGCAAGAAGAACTTTAGAACGTCGCATATGAGAAATACGCATCTTTTAACGCATTCTACCGAAAGGCCACATATCTGTGATCTTTGTGGACAGTCCTTTAAGAGGAGATATTATATGATAGAGCATAGAAGGAAACATCCTGACGCTCATTTGTCTTCGCCTCCTGTGCCTCttgggaaaaagaaaagcgtTACCGACACTGTGACTGAATGCCAAGCAGAAATTTCGCTGtaa
- Protein Sequence
- MFDAGCLRFVQQTNVSTLYSVDIHLMSTQRDPLEQTYLVVQNVDKYFLLPMEHKTSAQKHEEECITGDITIKLEEQDIPEDTTEQQLIESPERKDPQIDETAQVHTNLSVQTPVQFSQWLDQCSNGSESMTSNEETFTCDYCSKIFRKKYALQRHLETHSNARMECSVCHRLLKTKKTLKLHMMLHEDTGKIFECSECGFMSKRKQSMTRHQIRMHSKIADYKCPLCPKTFKFNGDLKRHHEAKHVVDPCYCEICGKTYRNNHFLRKHRRISKTHRNAYTRVCYGPIRGNQNIECATSQNKGKVKRVFNCSKCKWRFSSWRLLNKHMQRHLLIFNCDICGAVFKYKASFLKHQESHKQSEQKPTQHLTLKNKAVAPKQPKDQLRASRKPSSILQRRIAFRASKNLCKRRSNGRLNNSSSHAETRSISTNNTNSKHRKINDDDTTSSKNPTKKKLSLNFNNCSNQLQNNEKQSTQQEDLYKKLNDGTYTCDICQTTFEQKSKILRHIISKHSFHRPFKCSTCDKTFKYKCDLKAHRLIHQDVDSSLLHCCDKCDYRTKTKNNLKSHYIRRHTDDYKFACEHCGKRFKMEWDLKFHIGTHSNSQHMCDICGKFYTSNYSLYKHRKVAHLNDYKFQCNVCNKRLLTQENLDNHMQQHSRTYECKDCGKVFASKRYLATHMTTHTGVKPYTCHICKKNFRTSHMRNTHLLTHSTERPHICDLCGQSFKRRYYMIEHRRKHPDAHLSSPPVPLGKKKSVTDTVTECQAEISL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -