Bdah008351.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bombus dahlbomii
Gene Symbol
lov
Assembly
GCA_037178635.1
Location
CM074107.1:198489-203501[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.8e-18 4.9e-15 55.3 0.0 1 44 555 598 555 599 0.96

Sequence Information

Coding Sequence
ATGTCGAGCGCCGCGGACAGTCCTGATGGGATGGCTTTGCAGTCGCACTATTCCTTACGATGGAACAATCATCAGACGCACATACTTCAATCCTTCGAGGCGTTGCTACACGCGGAGATGCTTGTCGACGTGACCCTGGTCTGCGCCGAGACCAGCCTCAGGGCGCATAAGGTTGTGCTTAGTGCCTGCAGCCCATTCTTCGAAAGGATATTTGCCGAGCACCCCTGCAAACATCCGGTGATCGTGCTAAAGGACTTTCCCGGTCACGAAGTAGCGGCGCTGATCGACTTTATGTACCGTGGCGAGGTGAGGGTCGGTCGCGAGGAACTCGCAGGACTGATGAGAGCCGCGGAGAGTCTACAGGTGCGTGGATTAGCTTCGTCGGAACCGAGGCCGACATCGCCGCCGGAAACGCCGACCGTCGATATGCTGCTTGGCGAGCCGTCGACACCCGAGGGCGCGAGACAGGAAACTCCAGAGGAGGATGACAACGTTTCGACACCGTTCACGCGAGAACCGGTGCCGGCAGCGACAAACGCCATTTTTCACCCTAGCAGGGACCATCGCGACAGGTTACCGCACATGGGCCATCTGAACTTTGGGATACGCGAGCCGCGAGAGAGTTGCGGATCGCCGCTGCTACCTCGACGAAAACAGGCCAGGCCGCGTAGAAGATCCGGCGAATTGGTGCCGCAGGATCTCAGTCGACCTCATCCAACGCAGAGTCTTAGCCCGTTGGTCAGCGGATTGAATCTGGCCGCTATTAATCAACAATCGCAACACCAACAACACCAACAGCCCTCGAACTCGAGCATGCACAACCATCTACAGCAGGAGGATATAGCGGAGAACCTTTCGATGAAGAGATCGTTGACGCCTAGCGGAAACGATCATCATAACGTAAAAGCGGAGAGCAGTGAATCCGCTAGTAGTCCGAGAGGTTCTCCGTTGACCGGCACGAGTCTGCTGCATCCCGACGGATCCCTCCAAGATATTCCCTCTGCTGCGGTAGCAGCGGCGGcggccgccgccgccgccggcTTACCGACGATGACGGCCTTGTCGTTGACACCTCCGCACAGCGAGTACCTGACGAGTCTGGGCCAGTTAGCGGCCCAATGGATACCGAATCATTCGCAGGGCCAATTGCCAACTCAACCTCAGGGTCATCATCCGCCGGACGGCAGTCCTCACGGGCCTAATAGGACGCATTCGTatcaacaacagcaacaacagcaacaacatcagcagcagcagcagcagcagcagcagcaacagcaacaacaacaacaacaacagcagcagcagcagcaacagcaacagcaacaagaATCTCCGTTGGCACCGCGACGAAGTTCCGTCACGACCATGTTCCCGTTGGACGGTGTCGCGTCTCTAGGTGGTGGACTGTTTCCTCACGCGGGTGCTCTCGACAGAGGATCCCTTTTGGCGGATCTTCACGATAGCTTTAAATCGGAAACGTTGCACGGACTTTTCGGACCGACCAGTTTGAGCGGCCATCATTCGGGAAAAAAGCCAAAGAAACACAGGGGCGACGGTGACGTGGCGCGCAGATGGGGAGACCACAGCGGTCGAGGACTGCCGATGGGAAGGCCGAAAGGTCAGCACAGCGCACCCAGAGGCGGACCGCCACGATCTTGGACGAACGCCGAGTTGACCGAGGCGTTGCAGCACGTTTGGAACAAGAAGATGACCACGTCGCAAGCGAGCAGAATCTTCGGTATACCGTACAACAGTCTATTGATGTACGTGCGAGGCAAATACGGGAAAAGTTTGAAACTCGAGCAACTGAGAAGGGACTGCACGGGCTCGACAACGAGCGAGGTAGTAATAAATTCGTTGAACAACAACGTTAAGGCCGTCCAGCCGCCGACGCAGATGGCTCATCCGCTCGCCGGTCTACCGCCGCACCCGGGCGACGACGGTGTATTTCCTCATCATTCGTTGCTCAGCGCCAACCTGTCAGCGGGTTTCTTTCCCGACTttgccgccgccgccgccgcgtTCCCCGTGCCGGTTAACATGGTGCATTTACTTCCGCCGAGCGAACAAAAGGCCTTCGAACCAGCGGCGAATCCCGCTGGCGCGAGCGGTAGCGCGAGCGGCAGCGCCAGCGGCAGCGCCAGCGGCAGCGCCAGCGGCAGCGCGAGCGGCAGCGCGAGCGGCAGCGCGAGCGGTAGCGCGAGCGGCAGCGCGAGCGGAAGCGCGAGCGGAAGCGCGAGCGGAAGCGCGAGCGGAAGCGGCAACGggggcggcggtggcggcaaCGGTAGCACAGGCGGCGATCTTAATACTTCGCGGAGCAGTCGAACGCCATCGCCGGTtgatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcctCATCCTCATCGTCACCATCATCACGAATCGTTGCAACCGCAACCGCCACAGTCGGCGCCCACGCTACTTCAACAAAATGGTTCGGATTAG
Protein Sequence
MSSAADSPDGMALQSHYSLRWNNHQTHILQSFEALLHAEMLVDVTLVCAETSLRAHKVVLSACSPFFERIFAEHPCKHPVIVLKDFPGHEVAALIDFMYRGEVRVGREELAGLMRAAESLQVRGLASSEPRPTSPPETPTVDMLLGEPSTPEGARQETPEEDDNVSTPFTREPVPAATNAIFHPSRDHRDRLPHMGHLNFGIREPRESCGSPLLPRRKQARPRRRSGELVPQDLSRPHPTQSLSPLVSGLNLAAINQQSQHQQHQQPSNSSMHNHLQQEDIAENLSMKRSLTPSGNDHHNVKAESSESASSPRGSPLTGTSLLHPDGSLQDIPSAAVAAAAAAAAAGLPTMTALSLTPPHSEYLTSLGQLAAQWIPNHSQGQLPTQPQGHHPPDGSPHGPNRTHSYQQQQQQQQHQQQQQQQQQQQQQQQQQQQQQQQQQQQQESPLAPRRSSVTTMFPLDGVASLGGGLFPHAGALDRGSLLADLHDSFKSETLHGLFGPTSLSGHHSGKKPKKHRGDGDVARRWGDHSGRGLPMGRPKGQHSAPRGGPPRSWTNAELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLRRDCTGSTTSEVVINSLNNNVKAVQPPTQMAHPLAGLPPHPGDDGVFPHHSLLSANLSAGFFPDFAAAAAAFPVPVNMVHLLPPSEQKAFEPAANPAGASGSASGSASGSASGSASGSASGSASGSASGSASGSASGSASGSASGSASGSGNGGGGGGNGSTGGDLNTSRSSRTPSPVDHHHHHHHHHHHHHHPHPHRHHHHESLQPQPPQSAPTLLQQNGSD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00218529; iTF_00228777; iTF_00228580; iTF_00223982; iTF_00223790; iTF_00216990; iTF_00217172; iTF_00215807; iTF_00215626; iTF_00222624; iTF_00222439;
90% Identity
iTF_00218529;
80% Identity
iTF_00218529;