Basic Information

Insect: Bombus cullumanus
Gene Symbol: -
Assembly: GCA_014737535.1
Location: JACXIX010000095.1:360129-363924[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 5.7e-06 0.00053 20.3 1.3 1 23 146 168 146 168 0.98

2 15 0.00074 0.069 13.7 1.0 3 23 176 196 175 196 0.99

3 15 6.8e-05 0.0064 16.9 0.0 1 23 320 342 320 342 0.98

4 15 0.15 14 6.4 0.1 1 23 348 371 348 371 0.97

5 15 0.00018 0.017 15.6 4.0 1 23 397 419 397 419 0.97

6 15 1.5 1.4e+02 3.3 0.0 1 23 435 457 435 457 0.86

7 15 0.16 15 6.3 0.8 1 23 463 486 463 486 0.95

8 15 0.0033 0.31 11.6 3.0 2 19 494 511 494 515 0.95

9 15 0.00016 0.015 15.7 3.5 3 23 523 543 521 543 0.97

10 15 0.012 1.1 9.9 0.1 3 23 550 570 549 570 0.97

11 15 6.9e-06 0.00065 20.1 0.4 1 23 579 601 579 601 0.98

12 15 0.003 0.28 11.8 0.2 3 23 609 629 607 629 0.97

13 15 0.0026 0.25 11.9 0.2 3 23 637 657 635 658 0.94

14 15 0.9 84 4.0 0.0 1 23 672 694 672 694 0.92

15 15 0.0021 0.2 12.3 0.0 1 20 1069 1088 1069 1091 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	5.7e-06	0.00053	20.3	1.3	1	23	146	168	146	168	0.98
2	15	0.00074	0.069	13.7	1.0	3	23	176	196	175	196	0.99
3	15	6.8e-05	0.0064	16.9	0.0	1	23	320	342	320	342	0.98
4	15	0.15	14	6.4	0.1	1	23	348	371	348	371	0.97
5	15	0.00018	0.017	15.6	4.0	1	23	397	419	397	419	0.97
6	15	1.5	1.4e+02	3.3	0.0	1	23	435	457	435	457	0.86
7	15	0.16	15	6.3	0.8	1	23	463	486	463	486	0.95
8	15	0.0033	0.31	11.6	3.0	2	19	494	511	494	515	0.95
9	15	0.00016	0.015	15.7	3.5	3	23	523	543	521	543	0.97
10	15	0.012	1.1	9.9	0.1	3	23	550	570	549	570	0.97
11	15	6.9e-06	0.00065	20.1	0.4	1	23	579	601	579	601	0.98
12	15	0.003	0.28	11.8	0.2	3	23	609	629	607	629	0.97
13	15	0.0026	0.25	11.9	0.2	3	23	637	657	635	658	0.94
14	15	0.9	84	4.0	0.0	1	23	672	694	672	694	0.92
15	15	0.0021	0.2	12.3	0.0	1	20	1069	1088	1069	1091	0.94

Sequence Information

Coding Sequence: ATGGATGTTGCTGGAGACTTAACACTACAGTGGGTGGAGGAGGTGGGAAATGTTATTCATGAAGAAGTAATATGTGGTTTAGAAGCACAACTTGTTGGAGCAGAAGAGGAAGTGATAGGAGCTTGTGAAGAAGTTACAATAGAAGAAGCAGTAGAGTCAGTTCCCAATGTTACTTCTACGACAGAGTCAGAAATATTAATGGTACCACAATCCAACGACATGGAATCTATTTACATAGTTCCGCAAGATCAAGGTCATGATTATTTGAACATACAGGTTACAGAAGAAGTAATTGCAGATAATTGGGATAGATCTGGTCCAGAAGATGGAGTTGAGATATCAGAAGTAAAAGTATCTCATGAAAATTTGCTGGAATATGATGATATGGAGATACCATTGCCAATTGATCAAGATTCGTATACAAATAGTAGACCTTATCCATGTGATTTCTGTAGCAGGAGATTCAGAAAGAAAGCAAACTTAATGAATCATATGGTGACACATCAAACAGATCGACCTCATGGTTGTAATTTATGTGGAGCACGTTATGCAAGAAAATGTGATCTTATGAATCATTTAAAGATTCATGCTTATGCACCACCACGAGATGGTTTAGAGGATGATTTAAATGATGATGATTCATTGGCACCAGAAGAAGAGGAATCTACTAAAGGAAGACGTAAAAAGGTACAATCAAGCATACCAAGAAAACGCAAAAATAATTCTATTTCAAAACGCAATATCAATATGGAAGATAATAAAATGGAAATGGGCAAGTACGTCAGTAAATCTTATGATTATGTTGATGAAGATATGCGCCTTTTGGAGGAAATGACTAGTAGAAATTCTGCACGCAGTAGTAACTATGCATCAAGCTCAAGATGGACTGAACAGATGTCACCTGTATCAAATGAAGTTCAAACACCACGGTGGCCTATAACTGATCCAACAAAACCATATGTGTGTCAGTATTGTGGTGTTGGTTTTGCAAGGGAAAAAGCACTTGCTTCTCATGCACGCATACATGGTGGTGATAGTCCATTTGAATGTACGTCTTGTGGTGATATGTTTTGGGATGTTAATAATTTAAGGGAACATGTTCGTGTCAAACATGGTGGTGCAGTACAATCTGATACAGACGAATATGATAATGATGCCACATATACAGGAGATGAAAGATTTGGGGAATTCTGTTGTAATACTTGTGGTGTTCCTTTTCATCGATTGGATTTACTTAAACGCCATCAAAAGATTCATGTCAAACAGGAGACTGCTGATATGATGGAAGGTCCAAGTCGACTTCATGTTTGTAATGTTTGTGGTGAATGGTTTGAGGAAGCTTTGGCATTGTTAGCACATGCTGAACTTCATGCTAGATCACCCGGTCATCGATGTTTACTGTGTGGGGAAAGATGTCGTGATGATGCTGAAGTTGCTGAACATGTTCGACAAAATCATGCTCAAGATGCTCCACCAAATACATGTACTCTTTGTGGAAAAACGTGTAAAGATAAACGCAGTTTATTAAAGCATTCATGGGTTCATAATGTCGATAAAACTTTTGGATGTACAAAATGTGGGAAACGTTTTCATAGCAAAGCTAGATTACGAAGACATATGGTATCACATCGCAATAAGATGGTAGCTTGTGATGAGTGTGGAGAAGAGTTTCCTGACGGTAGAGCTCTGGTTAGCCACCGTCATTCACATAATAAAGACCTAGGTGGCCGTTCTTTCCCATGCCGAGAATGTGGGAAAACATTTGGTAGTCGTAGTTCACAACAAATTCATATTCGCATTCACACTGGAGAAAGACCATATGGTTGTAGATTTTGTTGGAAAGCATTTGCTGATGGCGGAACTTTAAGAAAACACGAACGTATCCATACAGGAGAAAAGCCGTATGGATGCGCAATTTGTCCACGTGCTTTTAATCAAAGAGTTGTTCTTAGAGAACACGTTCGTGCTCACCATTCAGGTCCTGATCCAAAATGTGTAGGTAGTATTACACCATACCTATGTAAAGTATGTGGTGATGCTTATGGGACATCGGAAGAAATAGTTGCTCATATTGTGCAACATTGTGATGATAATACCGCATTAAGACGTCAACCACAAACTGGACCACGTAAATATAAAAGAAGACGTAAATTAAAAACCCATGAAACCAACACTATGTTGCGTATGACTGAGCAGTATGATATGGAAGGAGGTTCTGATTCAGATGATAATACAAAAAGAAAGCTTGGAAGAAAAAATAAGCAACATCGATCGAACGTTGAAGAAGGTTATCAGAATGTTCTTAAAAGTTTTGAAAACTCTTTACAAAATATAAATTCAATCGTCAGCAATTCAAAGTTAAATCCTGGAAAATCGAAGCTTTCTAAGAAGAAGCTTAGGAAAGAAGAAAGAAAAAGTGAAGCTGAAGCTTCGTGTCAACCTGGTAGACCAAAAATGATTCATACCCAAAAAACAAGAGTGCCTGTAGAAATTGGTGGTGATGGAGTTAAAAAGGGACAGAAAACTAAAACAATGGTAACAAGGACACCTAAAATGATGCCACAAGAGCATAAGTTAGGTGTTTTCCCGGGCGGGGAAAGGAACAGACCAAGAACAAAAAACGTTAGTTATCACATTGAAGGGAAATTTCAACCAACACCTGCAACATTCCCAAAACAAAAGGAAGAAATTTTATTACCTCCAACACCAATACATCATCAATCGCCATTAACTAATATAAAAATAGAACCTAACTTACAAAAAACGTCAAATAATAATCACAGAAATAATAATGGCAATATTCTTGCTATTAATAATGAAAAAATGGAGTCAACACCTAGAAAAAAATCAGGTGTCTTGAGAAAAATTAAAAAACAGAAAGATGTAATTAAGCAAGAACCAATAGATATTGACCACGAGGAAATACAAAATAATAATAATACAGAAAATACGGACTCAGAAAGATTGATGGATCATTCAGTGGATGGAAGTAATTTAGAAGTTGCATTCGAGGCAAGTGTTACAACCGAGGAAGAAAATATACTTCCTGATGTAGGTGAAGCAAATAATACCGAAGATGTGGGTACTGGAAATGTAAAACTTAGTGTAAAAGTTGAGTCAACACCTCAAAGAATGTTGGCTGTTCATAGCGTTATAGCCCCTGTGGATGATATTCCAGAAACTATAATACCAGATGCTGTAGAATATACATGCGAAATGTGTTCTGCAGTATTTTCCAGCCGAGCAGAATTATTGGTCCATGTTCCAATACACATTTGA
Protein Sequence: MDVAGDLTLQWVEEVGNVIHEEVICGLEAQLVGAEEEVIGACEEVTIEEAVESVPNVTSTTESEILMVPQSNDMESIYIVPQDQGHDYLNIQVTEEVIADNWDRSGPEDGVEISEVKVSHENLLEYDDMEIPLPIDQDSYTNSRPYPCDFCSRRFRKKANLMNHMVTHQTDRPHGCNLCGARYARKCDLMNHLKIHAYAPPRDGLEDDLNDDDSLAPEEEESTKGRRKKVQSSIPRKRKNNSISKRNINMEDNKMEMGKYVSKSYDYVDEDMRLLEEMTSRNSARSSNYASSSRWTEQMSPVSNEVQTPRWPITDPTKPYVCQYCGVGFAREKALASHARIHGGDSPFECTSCGDMFWDVNNLREHVRVKHGGAVQSDTDEYDNDATYTGDERFGEFCCNTCGVPFHRLDLLKRHQKIHVKQETADMMEGPSRLHVCNVCGEWFEEALALLAHAELHARSPGHRCLLCGERCRDDAEVAEHVRQNHAQDAPPNTCTLCGKTCKDKRSLLKHSWVHNVDKTFGCTKCGKRFHSKARLRRHMVSHRNKMVACDECGEEFPDGRALVSHRHSHNKDLGGRSFPCRECGKTFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYGCAICPRAFNQRVVLREHVRAHHSGPDPKCVGSITPYLCKVCGDAYGTSEEIVAHIVQHCDDNTALRRQPQTGPRKYKRRRKLKTHETNTMLRMTEQYDMEGGSDSDDNTKRKLGRKNKQHRSNVEEGYQNVLKSFENSLQNINSIVSNSKLNPGKSKLSKKKLRKEERKSEAEASCQPGRPKMIHTQKTRVPVEIGGDGVKKGQKTKTMVTRTPKMMPQEHKLGVFPGGERNRPRTKNVSYHIEGKFQPTPATFPKQKEEILLPPTPIHHQSPLTNIKIEPNLQKTSNNNHRNNNGNILAINNEKMESTPRKKSGVLRKIKKQKDVIKQEPIDIDHEEIQNNNNTENTDSERLMDHSVDGSNLEVAFEASVTTEEENILPDVGEANNTEDVGTGNVKLSVKVESTPQRMLAVHSVIAPVDDIPETIIPDAVEYTCEMCSAVFSSRAELLVHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01424531;
90% Identity: iTF_01420417;
80% Identity: -