Bcos013145.1
Basic Information
- Insect
- Bombus consobrinus
- Gene Symbol
- lola_3
- Assembly
- GCA_014737455.1
- Location
- JACXIU010000100.1:868517-871604[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.3 6.1e+03 -3.1 0.1 4 20 102 118 101 120 0.74 2 2 1.4e-08 2.6e-05 23.7 0.0 9 40 394 426 393 431 0.86
Sequence Information
- Coding Sequence
- ATGGAAGACGACCAGCAGTTCTGCCTTAGATGGAATAATCATCAGAGTACATTGATCCAGAACTTCGACACGCTTCTCGAAAGCGGGACGCTTGTCGACTGCACATTGGCAGCAGAGGGGAAATACCTGAAAGCCCATAAGGTAGTTCTGTCTGCGTGCAGTCCTTATTTTGAGGGGCTCCTCAGTGAACATTATGACAAGCATCCTGTCTTTATACTCAAAGATGTTAAGTTTAAAGAATTAAAAGCAATGATGGACTATATGTACAGGGGAGAAGTAAATATCTCCCAAGACCAATTGGCGGCACTCCTTAAAGCCGCCGAGTCTCTGCAAATTAAAGGTCTATCGGAAAGTAAAACAAGTGGTAGCAGTAAGACGGATTCTAGGCAACAAAAGGTCGTTCCGCAAACATCACAGCCCGACATTCCAATTTCGTCTTCCGGTCTTACGATAGAAAAGAACAAAGTTCCTAGGCAGGGTGTGTCGCAAGGTCCCCTGGGGGATTTACCTGAAGACTCTGCCAGTCCTCAAATACCGAAGGGTTTGTCCTCTAGGGAAGGTTCCCAAAGTCCCACATCAAGGAAAAGAAAAAGATTTAGACGAAAAAGTATAGGTGATGATAATTCAGTAGAAAATCACGAAGCTTCGAATTCAAGTGACATGCCCCAACAAATGGGTGTCCCTGCGCTTGGAATTGCACCCGTAGCGGATGAAAAATCACATGCAGACCCCACAGATTCCATTGGCAGGTCAGCCCTAATGACGCAGCTGACGAAACCTGCCGATGAAATGTTACAGTTGCCGCTAGAAAAACCCGAACCAAGTGATAATCTCATTGAACCAAAGTCTGAATATCTGGAAGATCCAGAAGAAAGCGTCGAAGATCTGACGCTGGATGACGACATGAATGATTTGAACGAGATGGAACAAGATAACAATAGAGCCGGCCCATCCCACGACCCCTCCCAGCATCCTGGTGGGGGGGCGGGAGCGCGGTCTCGGTCGAGAGGGAAATTGAAGGGTGGTGATGGCGGTGCCCTCTGGGCGTCTCATTTCCTCGAATGTAAAAAAGGGCCGAATATGAGGCGGCCGCGCACAGATGTTGACGTAGGCGCGTTGCTTAAATCGCTGGAAAAAAAACAGGGCAGAAAGTATAGTTTAGACTCGGTTAAAATGTCCCTGGATGCAATATTACTGCAGGGAGTTAGCACCACTCAGGCATCAGAGATGTACGGCATTAATCGTTCAACCCTGCAATTCTATTTGAAAAAGTTGAACGTCGTCAGGAGGAGATGGAGACAACAACCTAGTAACCTGACCCAGCGTAAACAGCCTTAG
- Protein Sequence
- MEDDQQFCLRWNNHQSTLIQNFDTLLESGTLVDCTLAAEGKYLKAHKVVLSACSPYFEGLLSEHYDKHPVFILKDVKFKELKAMMDYMYRGEVNISQDQLAALLKAAESLQIKGLSESKTSGSSKTDSRQQKVVPQTSQPDIPISSSGLTIEKNKVPRQGVSQGPLGDLPEDSASPQIPKGLSSREGSQSPTSRKRKRFRRKSIGDDNSVENHEASNSSDMPQQMGVPALGIAPVADEKSHADPTDSIGRSALMTQLTKPADEMLQLPLEKPEPSDNLIEPKSEYLEDPEESVEDLTLDDDMNDLNEMEQDNNRAGPSHDPSQHPGGGAGARSRSRGKLKGGDGGALWASHFLECKKGPNMRRPRTDVDVGALLKSLEKKQGRKYSLDSVKMSLDAILLQGVSTTQASEMYGINRSTLQFYLKKLNVVRRRWRQQPSNLTQRKQP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01418424;
- 90% Identity
- iTF_00217825;
- 80% Identity
- iTF_00217151;