Bcon014060.1
Basic Information
- Insect
- Bombus confusus
- Gene Symbol
- -
- Assembly
- GCA_014737475.1
- Location
- JACXIV010000094.1:3423582-3426688[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00039 0.03 14.6 0.1 2 20 143 161 142 162 0.95 2 13 1.1 84 3.7 4.1 1 23 170 193 170 193 0.91 3 13 3e-06 0.00023 21.2 1.0 1 23 199 221 199 221 0.98 4 13 2.7e-06 0.00021 21.4 0.8 1 23 405 427 405 427 0.98 5 13 0.0022 0.17 12.2 0.4 2 21 437 456 436 457 0.93 6 13 0.00027 0.021 15.1 3.4 1 20 479 498 479 501 0.93 7 13 0.019 1.5 9.2 0.5 1 23 506 529 506 529 0.95 8 13 1.2e-06 9.3e-05 22.5 0.3 1 23 535 557 535 557 0.98 9 13 0.00012 0.0094 16.2 4.2 1 23 564 586 564 586 0.99 10 13 0.00034 0.026 14.8 0.4 3 23 594 614 592 614 0.97 11 13 0.00037 0.029 14.6 0.3 1 23 620 643 620 643 0.96 12 13 0.51 39 4.8 0.3 1 23 657 679 657 679 0.90 13 13 0.0018 0.14 12.5 0.0 2 23 935 956 934 956 0.96
Sequence Information
- Coding Sequence
- ATGGAAGCTCATGAGAGTGAGCAGTATATTACATTTACCCTTTCAGGGGTACACGATAGTATACAAGACGATATTATATCTCATGAGGAAATATGTGAACCAGTCGACGAATGCGTTCTACAAGAAGAACTCACTGAAGTATCTGTTACAGACGTTAATTCTAGTCTCTCGCAAGCACAGGTGGCAGTTGAGATTTTAGCGGAACATTCAGAAGAGGAAGATACATATCCTCTATATGCTAAAGAAGATCAACAACGGCAATACACATCTCGAGATGATGAATCGATGGCTGTGGAAGCTCTCAGACAACTTGGAGGCATGTATCCTTGTTTCGAAGAAAAAAAAGTATCTTGTCCGCATTGTGCAAACCTGTTTACAGAAGCTGAGTTGACAGAGCATAAAAGTACCTGTTCTGCTAATAAATTATCATGTACTACTTGTGGAGAAAGATTCGAAAGAAAAATAGATTTAAACAATCATATAGTTTGTCATCAAGTAGATCGTCCACATGCTTGCAGGACTTGTGGCAACTTGTTTCGTTCAAAGAACAATTTAAGATGTCATTTGTTGCAAGTACACCAAGTGGAAAGAACTCATAAATGCACCATATGTGGAGTAGATTTTCAGAGACCTTCCAGTTTATCCAATCATATGAAAATTCATACATATATTGCTGGACGTGCCATTATGCAGTCACAGAGTAACAATGTATCACAGTCAGAGGAACCATTCAGAAAATGGCCTGAAAATATGACAGAATCGCAAAACAATCAAGTGCCATCTTCGTCTGTACAAACTGTTCAAAATTATGATACAGTTCAATGGACAGTTCCATCTTATGACTTTCAAAGTGAGCAGGCAACAGTTAATTCAATATCTAATCCTGATGAAAAAATAGAAACTTTACATGAATTTACTGTAATGCCAAATGGAGAAGTAACAGAGTTTGAATATACTCAAGAAGATGATATAAATAATCAAGTCAATCAGCAATACGATCTTTCATTTGATGATGCTGATACAATAGTAAAAGCTGACACAATGGTAAAAGCTGACACGATGGTAAAAGCTGACACGATGGTAAAAGCTGACACGATGGTAAAAGCTGACACGATGGTAAAAGCTGACACAATGGTAAAAGCTGACACTTTACCATATAATAGTGAAAATAAAAAGAATTATACAGAAGTTGAAACACATCGTATAAAACAGTATATTTGTAAACATTGTGGAATTAGTTTTTCTCGTGCAACAGCACTAGTATCCCATGAGAAAACTCATACAGCAAAAAATTGGAACACGCCAATTGAATGTGAGTATTGCGATAAACAGTTTCAAGATGACAATCACTTAGCAACTCATCAAACAACTTGTGCGAAGAAACTAATGCAAAATAATATTGAGCAAGGTACATCTAATAATAAATGGGGTAAACATTCATGTTCTGAATGTGGCAAAAAATTTACAACCAAACAAAAAATGTTCAGACATCAGTGGATTCATAGAAAGAAAACACATTCCTGTGAAATATGTGGATCCCAATTTGAAAAGCAAAGTCAAGTGGATGAACACAGATTATCGGCTCATCCTGGTGACTCTCCATTTACTTGTACAGAATGTGGTAAAAGTTTTGTATCACGTCAAGGACTTTGGGAACATGGTAGAACACATGCTGGCAGTCCCGCACATTTTCAATGTGATACATGTTCCAAAACATTTTCATCAAGACAGGGATATTTAATACACCATAGAACTCATACTGGAGAAAGGCCATATGGTTGCAAATTTTGTTGGAAAGCATTTAGAGATGGTGGAACTTTAAGGAAACATGAACGTATTCACACAGGAGAGAGACCTCATGTTTGTCCTCTGTGTACGAGAGCATTTAATCAAAAAGTTGTTTTAAGAGAACATGTTCGATGGGTCCATGCAGCAGCAAAGAATGATACTGAAGTAAGTGGGCCCCCTTTTTCCTGTCCTATATGTGGTTCTTTAAATCAAGATCGGGATGAATTATGTGCACATATTGTTAAACATTCAGATCAAATGATTGCAGAAGCAAAAGCCAAAATAAACAGTAATGCACCAAAAACCAAACCAGTTAAGAAGAAATCAAAAGTGTCTGCAAATAAAAATTTACAAGAAAAACAAGAAGCTGAAAATCCTATAATTTGTAATTCAGACGAAACTGAAGCACTTTTGTCTATTACTGAATCAGATAAATCAGATGACCAACAAATTTTAAGCGATAAACAAACTACTAGCACTTTCCTTGTAGTTACTACAGAAAAAAGTAATGAAAATTATATTACAATATCTGAAATTAAACCTGAAGATGTACAATTATTAGTTGATGGAAAACGAGATGGGAATATGCATATTTCACAAGGTAATCATAGTCACGGAGAATCTTTAAATACGACTCATATAGTTTCTACAGATCAAGAAGGAAGCATACTTCATACCACAAGCAATGATAATGAAATAACTACAATGCATTTAATACAGACTTCAAAGGAAGGAAATACTTTACATTTAATATCAAAACAAAATGAATCGTTGCCTCTTCTGACATTACCAAATCCTGAAAGTCATGAAAATTTTTCCACTCAAATTGCACAAATAAGTAATGATGATTTACCAATGGATGTGATAACTCACCATGCAACTAGTCAAAGTCAAGATATCAAGAATCACAGTGAAATTGGAGAGGAATCATTAATACAAGAGGGAGGAACCCAAACGACTGTAATACAAGTTATACAATATCATCAGCAAGACAGTGATGAACCAGAGGTATTGATCTGTGGTATTTGTGGAGAAGATTTTAATGATAAAAATGTGTTGATGGAACACGTTAAAATTCACATATAA
- Protein Sequence
- MEAHESEQYITFTLSGVHDSIQDDIISHEEICEPVDECVLQEELTEVSVTDVNSSLSQAQVAVEILAEHSEEEDTYPLYAKEDQQRQYTSRDDESMAVEALRQLGGMYPCFEEKKVSCPHCANLFTEAELTEHKSTCSANKLSCTTCGERFERKIDLNNHIVCHQVDRPHACRTCGNLFRSKNNLRCHLLQVHQVERTHKCTICGVDFQRPSSLSNHMKIHTYIAGRAIMQSQSNNVSQSEEPFRKWPENMTESQNNQVPSSSVQTVQNYDTVQWTVPSYDFQSEQATVNSISNPDEKIETLHEFTVMPNGEVTEFEYTQEDDINNQVNQQYDLSFDDADTIVKADTMVKADTMVKADTMVKADTMVKADTMVKADTMVKADTLPYNSENKKNYTEVETHRIKQYICKHCGISFSRATALVSHEKTHTAKNWNTPIECEYCDKQFQDDNHLATHQTTCAKKLMQNNIEQGTSNNKWGKHSCSECGKKFTTKQKMFRHQWIHRKKTHSCEICGSQFEKQSQVDEHRLSAHPGDSPFTCTECGKSFVSRQGLWEHGRTHAGSPAHFQCDTCSKTFSSRQGYLIHHRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCTRAFNQKVVLREHVRWVHAAAKNDTEVSGPPFSCPICGSLNQDRDELCAHIVKHSDQMIAEAKAKINSNAPKTKPVKKKSKVSANKNLQEKQEAENPIICNSDETEALLSITESDKSDDQQILSDKQTTSTFLVVTTEKSNENYITISEIKPEDVQLLVDGKRDGNMHISQGNHSHGESLNTTHIVSTDQEGSILHTTSNDNEITTMHLIQTSKEGNTLHLISKQNESLPLLTLPNPESHENFSTQIAQISNDDLPMDVITHHATSQSQDIKNHSEIGEESLIQEGGTQTTVIQVIQYHQQDSDEPEVLICGICGEDFNDKNVLMEHVKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141985;
- 90% Identity
- -
- 80% Identity
- -