Bcon014480.1
Basic Information
- Insect
- Bombus confusus
- Gene Symbol
- -
- Assembly
- GCA_014737475.1
- Location
- JACXIV010000072.1:622226-624772[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 8.3e-06 0.00064 19.8 3.6 2 23 282 303 281 303 0.97 2 15 8.1e-05 0.0062 16.7 3.6 1 23 309 332 309 332 0.97 3 15 3.8e-06 0.0003 20.9 1.4 2 23 413 434 412 434 0.97 4 15 6.7e-06 0.00051 20.1 2.3 1 23 440 462 440 462 0.97 5 15 0.001 0.079 13.3 0.6 1 23 468 490 468 490 0.97 6 15 2.2e-07 1.7e-05 24.8 0.9 1 23 505 527 505 527 0.98 7 15 3.1e-05 0.0024 18.1 0.5 1 23 533 555 533 555 0.94 8 15 7.8e-06 0.00061 19.9 2.2 1 23 561 583 561 583 0.98 9 15 0.00064 0.05 13.9 0.2 1 23 589 611 589 611 0.99 10 15 2.9e-06 0.00022 21.3 0.3 1 23 617 640 617 640 0.94 11 15 1.5e-05 0.0011 19.1 1.3 1 23 646 668 646 668 0.98 12 15 0.00032 0.025 14.9 4.7 1 23 674 696 674 696 0.98 13 15 4.8e-06 0.00037 20.6 0.2 1 23 702 725 702 725 0.96 14 15 3.2e-06 0.00025 21.2 0.6 1 23 731 753 731 753 0.96 15 15 2.8e-06 0.00022 21.3 4.5 1 23 759 781 759 781 0.99
Sequence Information
- Coding Sequence
- ATGAATTCACTCTATAATACCACAGACAAAAAATTGTATCATAGAGGACAAATTGATGTAATAGATATGCCGATACAATTAACTTGTAATTACAAGTATTTCCTTGTCTATGAGGATCAAGTATCCAGATTTGTTGTGTTGAAAGGTTTACATGGAAATACAGCAAATGAAGTAGCTGTGAAACTGTTAGACATATTGGCTATTATCGGAGCACCACAGGTCTTACAAAGCAGCAATGGACGCAAATTTGCTAAAGAAGTTGTGCAGGAGATACGTCTTTTGTGGAAAGATTTCATGATACTTCATGGAGAAATCACTGAAAACAGTGAACAGAGTAGAGATTTTAAAACCTTACTTGAATGTTGGGTAGAAGAAAATCCAACGAAAACATGGTATGAAGCTTTGAAACATATACAAGTTTTTCAAAATTCAACATTTCGTTGTGAAAATGGAAAAATTCCATATGATATATTATTTGGGAAAAATGTACATGAAGAATTCCAAAAACGAACTAATCTAATAAATTTAAGAGATGATGTATGGACAGAAGAAGAATGGATTAGCCTCCTATCCGACAAAAAAGATGAAGTTAAGAAAGAAGATATGCAACAGCTTATAGATGAACCCGTCTTTGCAAACATTAGAGATGTAGATAGCTTAAATGATTATGAGAGTGAAGATTCTTGCAATGAAGTCAGGGGTGAATTTCAAAGAAGCACTCTTGGTTTTAATTTTGTGAATGTTAAGAGCGAACCTCTGAACATGCATACAGAAGATTTGGTATTTGAGGATGAATCAGGAATAGATGACAAGACATCAAATGCGGAGAATCAAATCAATTTAAAATGTAAAATCTGCAAGAAACAATACATGAAACCCGGTCACTTAAGAAATCATATGAGAACACATATAAAGGGGAAAAAGTTCGAATGTAAACTGTGTAATAAAACATTTCACGTTCTAAGTTTATATGAAAAACATATGAGGCAATCGCATAGACAAAGTAAATTATCCAGTCTGACTAGAAGTAGAAGAAGTAAAGACTCTCAAGATGAAACTACATTAGACACGAAAGCACCTAAATTAAGAAATTTCTCAGAATTAAATGCCAATGAAACACAATCAAATGAAACAGATGATTGTACAAAGGCAACAAAGAGTTTAAGTCTCCTCAAGGAAAGGAAGAAAATTGCTGCAGACAATCGTCCAATGAAAATAAATGGAGATCCAACTTTGGAATGTTCATATTGTAATCAAAAGTTTAACTTTCCTAGTGTATTAAAAAGGCATATGCGATCTCACACGAACGAAAGACCCTACATTTGTTCAATTTGTAATAAGAGTTTCAAACAATTGGGCCATCTTAGCCAACATTCATTAACGCATAAAGATTATCGGTCTTTCCATTGTGCGGTTTGCGGGGTGAAATTCGACTCTTTAAATTCGCTAAAGATCCATGCTCAATCGCATAAAGGACATTACATTTCAAAAACGAAAGAGACTTTCCGTTTGTTCGAATGTGATAACTGTAAAAAGGTGTTTACCACCAAAAGCGTTTTGGAACGACACATACTTACTCATTCTCATGAACGTCAATTCCCATGCATCATTTGTGGGAAAAGATTCAAACAAGCGGGACACGTGAAGTCTCACATGTTGGTACACACAGGAGAACGAAAATTTGAATGTTCGGTCTGCAAAAAGAGATTTAGCCTTTCGAATTCTTTGAAGAAACACATGTATGTTCACAATGGAGAAAAACCTTATCAATGCGACGTATGTGGTGCACGGTTTCTTGAAAAAAGAAATCTAAACGGGCATCTAATGACTCATACAAACGAGCGTCCATTCCGCTGTAAAATTTGCGGAAAAAGATATACTTTAGCCGATACTTTGCGTCGGCATATAAGTGCTGCACATGAAGATGGACGCACTTATCAGTGTGAGATCTGTGCGAAAATGTTCAAGCAGCTTGCTCATCTGTCCGTTCATAAAAAAGTACACAACGACGAACGCCCATTTCAGTGTCATTTATGCGAGAAAAATTTTAAACATAAAAACGTGCTTAAATCTCACTTAGCCATTCATGCAAATGTAAGGCCATTTGAATGCGATGTATGCAAAGCTACATTTGTAAGAAAAACAAATCTACAAACCCACATTGCATCAGCTCATATGAACGAAAGACCATATGTTTGTACTATTTGTGGAAAACGGTTCAAACAGATTAGTCACTTAAATGGTCATGTAGTAGTGCATAGCAATTTAATGCCTTATCAATGCGATTTCTGTGATCGACGATGTAATAGACTCGATAATCTAAAGAAACATATGCGTCTTCATACGAAAAATAAAGAATAA
- Protein Sequence
- MNSLYNTTDKKLYHRGQIDVIDMPIQLTCNYKYFLVYEDQVSRFVVLKGLHGNTANEVAVKLLDILAIIGAPQVLQSSNGRKFAKEVVQEIRLLWKDFMILHGEITENSEQSRDFKTLLECWVEENPTKTWYEALKHIQVFQNSTFRCENGKIPYDILFGKNVHEEFQKRTNLINLRDDVWTEEEWISLLSDKKDEVKKEDMQQLIDEPVFANIRDVDSLNDYESEDSCNEVRGEFQRSTLGFNFVNVKSEPLNMHTEDLVFEDESGIDDKTSNAENQINLKCKICKKQYMKPGHLRNHMRTHIKGKKFECKLCNKTFHVLSLYEKHMRQSHRQSKLSSLTRSRRSKDSQDETTLDTKAPKLRNFSELNANETQSNETDDCTKATKSLSLLKERKKIAADNRPMKINGDPTLECSYCNQKFNFPSVLKRHMRSHTNERPYICSICNKSFKQLGHLSQHSLTHKDYRSFHCAVCGVKFDSLNSLKIHAQSHKGHYISKTKETFRLFECDNCKKVFTTKSVLERHILTHSHERQFPCIICGKRFKQAGHVKSHMLVHTGERKFECSVCKKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLMTHTNERPFRCKICGKRYTLADTLRRHISAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHIASAHMNERPYVCTICGKRFKQISHLNGHVVVHSNLMPYQCDFCDRRCNRLDNLKKHMRLHTKNKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00684907;
- 90% Identity
- iTF_00225376;
- 80% Identity
- -