Bcon006484.1
Basic Information
- Insect
- Bombus confusus
- Gene Symbol
- gtf3a
- Assembly
- GCA_014737475.1
- Location
- JACXIV010000015.1:2073855-2078313[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00013 0.01 16.1 3.2 1 23 91 113 91 113 0.98 2 17 4.6e-06 0.00036 20.6 0.3 1 23 119 141 119 141 0.98 3 17 0.0009 0.069 13.4 0.6 1 23 146 169 146 169 0.96 4 17 4e-05 0.0031 17.7 0.5 1 23 175 197 175 197 0.97 5 17 6.5e-05 0.0051 17.0 0.2 1 23 203 226 203 226 0.97 6 17 8.7e-07 6.7e-05 22.9 0.4 1 23 236 258 236 258 0.96 7 17 8.2e-05 0.0063 16.7 2.4 1 23 262 284 262 284 0.95 8 17 1.8e-05 0.0014 18.8 0.1 1 23 290 312 290 312 0.98 9 17 1.2e-05 0.00096 19.3 0.7 3 23 579 600 578 600 0.93 10 17 0.0023 0.18 12.1 2.3 1 23 604 626 604 626 0.99 11 17 0.0047 0.36 11.2 1.3 1 23 632 655 632 655 0.95 12 17 0.00013 0.0098 16.1 3.0 1 21 662 682 662 683 0.95 13 17 0.00033 0.026 14.8 1.6 1 23 710 733 710 733 0.96 14 17 9e-05 0.0069 16.6 1.1 1 20 770 789 770 794 0.90 15 17 3.4e-07 2.6e-05 24.2 2.0 1 23 796 818 796 818 0.98 16 17 7.7e-05 0.0059 16.8 0.9 1 23 824 846 824 846 0.96 17 17 1.6e-06 0.00013 22.1 0.7 1 23 852 874 852 874 0.99
Sequence Information
- Coding Sequence
- ATGTTGAAAAATCACGTTGTTGATTGCAGAACTCTCGGGCTCGTACAGTGGGATGCGAAATCCAAAGACTGCGGCGACCAGGCCATCAAGATCTTCGAATCAAGATCACCTATATCATCAGAACCATCGCCAGAGCAAGTGAATTCTTCGTCTGATAGGAAAGATCGTACCTCGAAGGAGCCAAATTATCGTACAAATTCTGACAACGATTCACTGACAAATTCATCTACAAAAAGGAAGAAGAACAAAAGATTCGAAGATCAAGAACGATACATCTGCTCCACCTGCAAGTTACATTTTGACAGACAAGGAGACTACAAGCGTCACATGATCAAGCACAGCGATCTTCGTCCTTACAAATGCGAAATCTGCGACAAGGCGTTTAAACGTTCCTCAGAGGCGTCCAACCACGCTCAGATCCATCGTGGTATCGAATACGCCTGCGAAGTATGCGGTTTCACCACGATAAATAAATTCTCTTTAAGAATGCATAATCGTCGGGTTCACCAGCGTGACTTTCGTTATCGTTGCGATCAATGTGACAAGGGTTTCATGTCTAATTACGATCTGGAGGACCACAAGGCCAGTCATCTAGGCAAGAAGACCTTCATCTGCGAATTCTGCGGCAACGCCTACTCCCAGAAATCCTACTTGGTAGCACACAAACGGGTAATTCATGGAATTCAAAAAAGCGCGCCGAAGGAGTTCCAGTGCAACATCTGCAACAAGAGTTTCGCTACCGAGCAGAATCTTCGTAATCACGTTGCTCTACACTCGCAGATGTTCCTGTGCGCCCAGTGCGGCAAGAAGTTCGCAACCAATCACGCTCTGAAGCTTCACAGCCGAAAACACACAGGGGAGAAACCTTACGAGTGTATGGTTTGCTCGAAAGCTTTCGCCAGATCGGCTGCGCTCAGAGTGCATAAACTAACACACACAGGCGAGAGGCCGAGGTCTACGATCGCAGAAACGTCCCTGGGCCAGGATAGAAATGATCGAGCGCAGTTCCAAGTTACTGTTCCAGCTTCTAGTCCCGCGATACGGAATTCCTTGAAAATTGAAATAGATGACGACGAGAACCGTCGGAGGACAGCCAAAGACAACGAAGCCGAAGTTAGCGGTAGTAATTTGCCTTCAGGCACAAAAACAGTTGATAACTCGACCATAGACTCGGTGAAAACTGTTTTGCTGCCTATCAAAAATCCAGTGACGAAGGAAATTAAGTTTATGTTTGTGCCTATCGAAATGAGGGACGAGTCTGGATTAAACATAATCAAAAGTGTATTGATTCCATCTCCAGAAGAGGATGGATCGATGTCTTACGAAATTAAAAAGGTCTTGGTACCTATTAAGCCGGAACCGATCTTACCGCAGGAAAAGGAAACTGAGAAAGGAACGTTATCAACGAATAAAGCTAGAAGGAAACGGACGAATTGCAAGAAAAAAAAGGAGAAAGGAAACGAAGAGATACTGAAGACGTCATTGGAAATAGAGACGAGGAACAAAGAAAGAGAAGAGAAGGAACAAGAGAAAGAGAAGGAACAAGAGAAAGAGAAGGAACAAGAGAAAGAGAAGGAACAAGAGAAAGAGAAGGAACAAGAGAAAGAGAAGGAACAAGAGAAAGAGAAGGTAGAAGAGAAAACGGAGAAAGTATCAGAGCCAGAACTAAACAGCGTATCAACAGATGAACGCAAGGAGGAAGTGGATCCAACGTTGGACGCTTTAAAGAACATTTGTCCAGTCTGTCAGAAGTCTTTCAGAAACAAGGACCAAATGCAAAAGCACGTCGTCAGGACACATAAGAAACCATATAGATGCTACAAATGTCGTAAAGTCTACTTCTCCGACTTTGCTCTAGAAGAACACCAGAAAACACACGATGTGGTTTCGTTCTATAAGTGTTCCATCTGTCATATGCAGTACAAAACCGCGACAGGAGTTAAGAATCACGAGATCCGCGAACACAGTGACGCAGACCCGGAATTTACGTGTCATTACTGTGAGAAGCGATTCAAAGTAAAAATAGACCTAAACCAGCACATTCACAGATCGTGTGGCATGGCTGAGGAGAATACCGTGCATGACGAAGTAACAACACAGGAAAATAACAAGAAAGACAGTTATCTGCATTCTTGCGGTATCTGTTCTAAGAGATTCAAAGCATGGAACAGTTTGGAGAGTCATTTATTGAAGAAGCACAAAGCTCATAATAAAGGATTAGAGTTGTTAAGGACGCTGTGTGAGAAGAAATTACAATCCAAAATTGACTTTTATCGTCGTGGGCGTATAAAATCGAAGCCCAAGCAGCACAATTGTGTCATTTGCCACAAAAGATTTGCTACTGCGAGTAGTCTTCGTAATCACGTCGCTCTACTCTCGCATACTTATGCGTGTTCCCAGTGTGGCAAGAATTTTACCACGAACTACTCGTTGAAGCTGCACCTTCGAAAACACACTGGCGAACGACCGTATCAGTGTAAAATATGTTTAAAGACATTTACCAGAGGAGCCTCGCTTAGAACACATAAAGTAATTCACAGTGGTGTGAGACCATACGTGTGTGATTTGTGTGGTCGAGGTTTCACTCAGAAAGGAAGCATGATGACGCATCGTCGTACGCATTACCGAAGTCATCCGTCGGCTCCTCCTCTGACACCGAATAATCCCGAGAATAACGGACATTAA
- Protein Sequence
- MLKNHVVDCRTLGLVQWDAKSKDCGDQAIKIFESRSPISSEPSPEQVNSSSDRKDRTSKEPNYRTNSDNDSLTNSSTKRKKNKRFEDQERYICSTCKLHFDRQGDYKRHMIKHSDLRPYKCEICDKAFKRSSEASNHAQIHRGIEYACEVCGFTTINKFSLRMHNRRVHQRDFRYRCDQCDKGFMSNYDLEDHKASHLGKKTFICEFCGNAYSQKSYLVAHKRVIHGIQKSAPKEFQCNICNKSFATEQNLRNHVALHSQMFLCAQCGKKFATNHALKLHSRKHTGEKPYECMVCSKAFARSAALRVHKLTHTGERPRSTIAETSLGQDRNDRAQFQVTVPASSPAIRNSLKIEIDDDENRRRTAKDNEAEVSGSNLPSGTKTVDNSTIDSVKTVLLPIKNPVTKEIKFMFVPIEMRDESGLNIIKSVLIPSPEEDGSMSYEIKKVLVPIKPEPILPQEKETEKGTLSTNKARRKRTNCKKKKEKGNEEILKTSLEIETRNKEREEKEQEKEKEQEKEKEQEKEKEQEKEKEQEKEKEQEKEKVEEKTEKVSEPELNSVSTDERKEEVDPTLDALKNICPVCQKSFRNKDQMQKHVVRTHKKPYRCYKCRKVYFSDFALEEHQKTHDVVSFYKCSICHMQYKTATGVKNHEIREHSDADPEFTCHYCEKRFKVKIDLNQHIHRSCGMAEENTVHDEVTTQENNKKDSYLHSCGICSKRFKAWNSLESHLLKKHKAHNKGLELLRTLCEKKLQSKIDFYRRGRIKSKPKQHNCVICHKRFATASSLRNHVALLSHTYACSQCGKNFTTNYSLKLHLRKHTGERPYQCKICLKTFTRGASLRTHKVIHSGVRPYVCDLCGRGFTQKGSMMTHRRTHYRSHPSAPPLTPNNPENNGH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -