Basic Information

Insect: Bombus campestris
Gene Symbol: -
Assembly: GCA_905333015.1
Location: HG995128.1:3169541-3172995[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 2 1.6e+02 2.9 7.1 1 23 12 35 12 35 0.92

2 19 3e-06 0.00024 21.3 0.3 1 23 41 63 41 63 0.97

3 19 1.9e-05 0.0015 18.8 1.4 1 23 69 91 69 91 0.97

4 19 0.0015 0.12 12.8 0.6 1 23 97 119 97 119 0.98

5 19 2.3e-06 0.00018 21.6 7.0 1 23 125 147 125 148 0.96

6 19 0.0017 0.14 12.6 2.1 1 23 164 187 164 187 0.96

7 19 0.0093 0.74 10.3 0.6 3 23 197 217 195 217 0.95

8 19 6.3e-07 4.9e-05 23.4 0.4 2 23 224 245 223 245 0.98

9 19 0.00036 0.028 14.8 0.5 3 20 253 270 251 272 0.94

10 19 0.096 7.6 7.1 0.7 2 23 307 329 306 329 0.96

11 19 1e-05 0.00082 19.6 0.9 1 23 335 358 335 358 0.97

12 19 0.059 4.7 7.8 0.5 2 23 364 385 363 386 0.94

13 19 3.1e-05 0.0024 18.1 0.3 1 23 391 413 391 413 0.97

14 19 0.00019 0.015 15.6 0.5 2 23 420 442 419 442 0.94

15 19 5.9e-05 0.0046 17.2 2.1 1 23 464 487 464 487 0.93

16 19 0.0019 0.15 12.5 0.1 1 23 498 520 498 520 0.95

17 19 0.0074 0.58 10.6 3.6 1 23 526 548 526 548 0.94

18 19 4.5e-07 3.6e-05 23.9 1.1 1 23 554 576 554 576 0.98

19 19 1.6e-05 0.0012 19.0 0.1 1 21 582 602 582 603 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	2	1.6e+02	2.9	7.1	1	23	12	35	12	35	0.92
2	19	3e-06	0.00024	21.3	0.3	1	23	41	63	41	63	0.97
3	19	1.9e-05	0.0015	18.8	1.4	1	23	69	91	69	91	0.97
4	19	0.0015	0.12	12.8	0.6	1	23	97	119	97	119	0.98
5	19	2.3e-06	0.00018	21.6	7.0	1	23	125	147	125	148	0.96
6	19	0.0017	0.14	12.6	2.1	1	23	164	187	164	187	0.96
7	19	0.0093	0.74	10.3	0.6	3	23	197	217	195	217	0.95
8	19	6.3e-07	4.9e-05	23.4	0.4	2	23	224	245	223	245	0.98
9	19	0.00036	0.028	14.8	0.5	3	20	253	270	251	272	0.94
10	19	0.096	7.6	7.1	0.7	2	23	307	329	306	329	0.96
11	19	1e-05	0.00082	19.6	0.9	1	23	335	358	335	358	0.97
12	19	0.059	4.7	7.8	0.5	2	23	364	385	363	386	0.94
13	19	3.1e-05	0.0024	18.1	0.3	1	23	391	413	391	413	0.97
14	19	0.00019	0.015	15.6	0.5	2	23	420	442	419	442	0.94
15	19	5.9e-05	0.0046	17.2	2.1	1	23	464	487	464	487	0.93
16	19	0.0019	0.15	12.5	0.1	1	23	498	520	498	520	0.95
17	19	0.0074	0.58	10.6	3.6	1	23	526	548	526	548	0.94
18	19	4.5e-07	3.6e-05	23.9	1.1	1	23	554	576	554	576	0.98
19	19	1.6e-05	0.0012	19.0	0.1	1	21	582	602	582	603	0.96

Sequence Information

Coding Sequence: ATGtcATCGCGAAGAGCAATTTCTCGAGCGATTCACGAATGCATCAAATGTGGAGCCTGCTTCTGTCACATGAGGAAACTGGTAGAACACCTGAAGAACCTCCATGGCATCGACAGAGCCTTCAGCTGCGACGAGTGCGGCAAAACTTTCAGAAGTCCCATGAACATAGCTCGTCACAAATTAATTCACACTGGTTTCAAAAGATTCGCTTGCGACTTATGCGATTATAGATCAAACCAAAAGTCAAACCTCGAGAGCCATCGTCGAAGACACACCAAAGACTATTCCTTTAAATGTGAACAATGTGAAAAAGGCTTCTTCCTGAGAACAGAATACTTAGAACATATAAATGTTCATACTAGGAAGCAATTGTACAAATGCGATCACTGTAGCAAATCATACCCTTACAAGAAGAACCTGACAAATCACTTAAGAACGCATCATGCGAGTGTCTCGCAGTTAGAATTAAGAAATGACATGACAAAGAAGCACGTGTGCACAATTTGCCTGGAGGGTTTCACGCGAAAATTGTTCTTGGAAAGGCACTTGAAGCAACGACACGGTTTGTACGAGAAAATGAAGCATTTATGCGATCTGTGCGGAGCAGTTTTGTCTTCCAAGAGGAGGTTGATGGTGCATAGGCGGGGCCACGTTAACGAGAAGATCGTAAAATGCGATTTATGCGACAAGCAGTTCTCTAGCAAAGAAAACCTCGCTGTTCATCGGCGAGTGCACACTGGGGAGAAACCGTATGGTTGCTCGCAGTGTGGAAGAATGTTTACACAGAGGACTTCTTTGATATTACATCTTAGCCACTGGGGCAACGATCACGACGTGCTTAGCAGCTGCGAAGATTTCAGAATCAAGAACGAGGATATTCTTCTCGATCCTGGGCAAAAGTTCGAGGGAAACGAGAAAGTCTGCGACCTTTGTCAAGAAAAATTCCACTTCGTAACCAGATTAGTAGCTCATCTGAGGATTGTCCACGGTATCCATAGACCCTTCAAATGTGTCACATGTGGGAAGACATATCCGCAGCAATTTATGCTAAACGCCCATGTGAAAAAATCTCACACTCCTAAAACGATCCCCTGCACTGAATGCAGTTTCATGGGGGTGAATGCCACTGACGTGGAAAGACATACGAAACGACACCACCGAGAAACGAAGTTCACCTGTGAAATCTGTAGCGAGAACTTCGTAGACAAGGATTCCTTGATGACTCATACAACTATACATAACTTTATGCAGTTTCAACAATGTAACGCTTGTGGTACTACGTTCAACGACGCGTACAGCCTAAAGGAGCACAACCGTTTGTACCACTACGATCCAACAACGTTGATTCAAGAGAAGCTCGAAACTGACAGTCATCAGAATATCACGGAGCACAAATGCGACGTCTGTGGGAAGGTTTACAAGTACAAATCGGTCTTGAAGCAACACAAAGTGAAAGCTCACGGTGATATGCCAAATTACGAGAGACGTCGATATTTATGCGCTCTTTGCgggaaagaattaaaaaccgCAAAAGGCCTCGAAATTCACAATCGATCGCACACCGGCGAAAAGCCTTACACCTGCGAGGTGTGTGGCAAGTGTTTCGCCTGTGAAACACTGCTCAGGACTCATAATGTCACGCACACTGGCGAGAGAAAGTATTCTTGCGACCAGTGTGGCAAAGCTTTCACCCAGAGATCCACGTTGGTCGTGCATAAACGTTATCATACCGGCGAACGACCGTATGTTTGTCCTCGATGTGGAAAAGGTTTCGTCACCAGGACTGTCCTAAACACTCACATGAAGTCCTGTCGTTGA
Protein Sequence: MSSRRAISRAIHECIKCGACFCHMRKLVEHLKNLHGIDRAFSCDECGKTFRSPMNIARHKLIHTGFKRFACDLCDYRSNQKSNLESHRRRHTKDYSFKCEQCEKGFFLRTEYLEHINVHTRKQLYKCDHCSKSYPYKKNLTNHLRTHHASVSQLELRNDMTKKHVCTICLEGFTRKLFLERHLKQRHGLYEKMKHLCDLCGAVLSSKRRLMVHRRGHVNEKIVKCDLCDKQFSSKENLAVHRRVHTGEKPYGCSQCGRMFTQRTSLILHLSHWGNDHDVLSSCEDFRIKNEDILLDPGQKFEGNEKVCDLCQEKFHFVTRLVAHLRIVHGIHRPFKCVTCGKTYPQQFMLNAHVKKSHTPKTIPCTECSFMGVNATDVERHTKRHHRETKFTCEICSENFVDKDSLMTHTTIHNFMQFQQCNACGTTFNDAYSLKEHNRLYHYDPTTLIQEKLETDSHQNITEHKCDVCGKVYKYKSVLKQHKVKAHGDMPNYERRRYLCALCGKELKTAKGLEIHNRSHTGEKPYTCEVCGKCFACETLLRTHNVTHTGERKYSCDQCGKAFTQRSTLVVHKRYHTGERPYVCPRCGKGFVTRTVLNTHMKSCR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00361060;
90% Identity: iTF_00684909;
80% Identity: -