Basic Information

Insect: Bombus breviceps
Gene Symbol: PRDM15
Assembly: GCA_014825925.1
Location: CM026182.1:12528210-12530895[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2.2e-05 0.0017 18.6 3.9 1 23 254 276 254 276 0.98

2 12 0.0023 0.17 12.3 4.5 1 23 281 303 281 303 0.96

3 12 0.00074 0.055 13.8 1.4 3 23 314 334 313 334 0.98

4 12 3.3e-06 0.00024 21.2 2.9 1 23 426 448 426 448 0.99

5 12 0.0016 0.12 12.7 1.9 1 23 453 477 453 477 0.90

6 12 1.1e-06 8.4e-05 22.6 1.2 1 23 515 538 515 538 0.96

7 12 1.1e-06 8.4e-05 22.6 0.8 1 23 571 593 571 593 0.99

8 12 0.00015 0.011 16.0 4.0 1 23 607 629 607 629 0.96

9 12 0.00014 0.01 16.0 4.7 1 23 635 657 635 657 0.98

10 12 0.0013 0.093 13.0 3.2 1 23 663 685 663 685 0.98

11 12 8.8e-05 0.0065 16.7 6.6 1 23 691 713 691 713 0.97

12 12 0.0002 0.015 15.6 0.3 1 21 719 739 719 740 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2.2e-05	0.0017	18.6	3.9	1	23	254	276	254	276	0.98
2	12	0.0023	0.17	12.3	4.5	1	23	281	303	281	303	0.96
3	12	0.00074	0.055	13.8	1.4	3	23	314	334	313	334	0.98
4	12	3.3e-06	0.00024	21.2	2.9	1	23	426	448	426	448	0.99
5	12	0.0016	0.12	12.7	1.9	1	23	453	477	453	477	0.90
6	12	1.1e-06	8.4e-05	22.6	1.2	1	23	515	538	515	538	0.96
7	12	1.1e-06	8.4e-05	22.6	0.8	1	23	571	593	571	593	0.99
8	12	0.00015	0.011	16.0	4.0	1	23	607	629	607	629	0.96
9	12	0.00014	0.01	16.0	4.7	1	23	635	657	635	657	0.98
10	12	0.0013	0.093	13.0	3.2	1	23	663	685	663	685	0.98
11	12	8.8e-05	0.0065	16.7	6.6	1	23	691	713	691	713	0.97
12	12	0.0002	0.015	15.6	0.3	1	21	719	739	719	740	0.93

Sequence Information

Coding Sequence: AtggaaatcgaaaataaagcAACAATTTCATCAAATGATTGTGGCAATGTTTGCCGTGTTTGTCTTGCGACAAATCAAAATAATCAATGCATTTTCGATGGTAGACGAAGTGATTCGATTAATGAAAGTACAATTGATTTGTCTGAAAAACTTCGTTTGTGCAGTGGTGTGGAGGTACTGGAAAATGATGGTTTACCTTCCACTATTTGCACGAAATGTATATTAAAGATCAATGATGCCCATGAATTAAGAAGGCAATGCCAGCAATCCGATATCCAATTAAGAGAATTGTATGGTAAAGtggagaaaatatataatatcaatttatgtAAAACTACAAAAGATAAATATTCCCAGACTGATTATTCATTTACTTCtgatttaatcaaaattgaaGCTGATTCATTTTCTGCAATGGGTTATAATCCTTATCCAATGATAATGCTTAATTCTAGTACTAAAGACATAAAAGATCATGAAGTTATTAATGAATCAAAGTACGcagaagataaagaagaatCCACTAGTAACTTGAGTAAACAAAATGcctatattaaatgtaaacaaACAGAATATGAGAAAAGTGTTACAGGAAGagaagtttatcgaacaagaAGAATGACAATGTTTAAAAGAGTAACatctatagaaaatttaaaaaatcataaggAAAGACAGagacaatatataaaaaagaatacagCTGTTAAATGGGATGATGATGCAGCAGATATTAAAAAGACAGATTCTCAATGTTCATATAATTGCCCAAAATGTACCAGGTGCTATTCCAGCAAAAGATCTTTGGATAGACATATATTAACTCATGATGAGAAGAAATTCACATGTGATAAATgtaacaaacatttttttcaacttGATAAATTGATACAACATAATAAACTACATATTGTTAAAGAAAAACCTAAACCAGTAttgtgtaaaatatgtaataggAATTTTAGGAAAACTGATACTATGGTAAGACATTTAAATGTTCATAAAAGAACTAATCCAAAGGAGGTCCTTTCCATTCTGAAAGAAAttagagataaaagaaaattggaaactaTAACTGAaccagaaaaaaaagaagttgaaaataataaagataaaaaagaaacagaggaaGAATTTGCAACTAATGAGAATAATACTTTAAGTGTCCTAAAAAAAAGGACTTTAGAATCTAAAGATAAAAAGTGTTCCGGCTCATTATCTACCGAACTACTAATGTCTACTGAAAACTTTGATTCTTTCGATCATGAGACACTTTATCGATGTAACTACTGTACCAAACGTTATGCGAACGAAAAATCTCTTCAGAAACATTTACAGACTCATATTGAAAAAAGATTTGTTTGCAATGtatgtaatatgaaattttttcgcCAAGATAGATTAAATAGTCATAAAAATCGATATGgacataatgaaaattcagCATTAGAGGTGCAAAAACCAAGTGACGATAAGTCAgccattaaattaataaacagtTGGATCCGAGAGGAGCTTGATTCAGATAACGAGGAAAAGGGTTTTCCTTGTAAAATTTGTGGAAAATCATACGATACAAAAAAATCCTTGCTAAAGCATCAATTAAGTACGCATAATACGGAAGCAGGAAACTGCACAACGTGCGGTAAGATATGTGCCTGTGACGAGAAGGAGAAGAATCAACATAAATCAAACGAAAGATTAAAACCATATCGATGCGGAGAATGTAATAAATCCTTTGAAAAGGAagttaaattacaaaaacatATAAGAATCCACGAGCGCGCCAAGGAACAGCAAgatgtaaattttaaacgatttttatgTCACATATGTAGCAAAACCTTTAGACAGAATACAGGTCTCATGTTCCATATGAGGACGCATACGGGATATAAACCTCatgtttgtaaatattgtGGAAGAGGATTCACTTCAAATTCTAATTGTATCAATCATGAAAGAACTCATACTGGTGATAGACCGTTCGTTTGTCATTTTTGTAGTGCTGCTTTTGCCAAATCATGTACGCTTAAAGCACACATTACAACACATACTGGAGAAGCAAATTATCATTGTAAAACTTGCGGTAAATCGTTTAGGCGACTAAAGTACTTAAAAGAACACAAATTCACGCATACAGGGGAAAAACCATATGCTTGTAAGATTTGTGGCACTGCGTATAGCCATTCTGGTAGTTTATTCGTACATGAGAAAAAGTGTAAAGCGCAATATAACAGTTATCAATCCAATTCGACACAAAATATGCAAACCTATTGCGAGTCGGAAACGTCTTCGCCAACCTCTATCATTACCGTTTTACCgcaagtttatttaaataatactaatGCGATAAACACACAAAGTAGCAAAACCTATATGGacaatattcaaaaaataaattctcagAATATTGCTAACATAAATGCTGTTAATACATCAGATTTACATATTCACACGAATTCCGAAATTTCTGATGTTTCTTTAGCTGTTAAAAGCTTCGCTCTTATCGGACAAATGTTTCAATCGTAG
Protein Sequence: MEIENKATISSNDCGNVCRVCLATNQNNQCIFDGRRSDSINESTIDLSEKLRLCSGVEVLENDGLPSTICTKCILKINDAHELRRQCQQSDIQLRELYGKVEKIYNINLCKTTKDKYSQTDYSFTSDLIKIEADSFSAMGYNPYPMIMLNSSTKDIKDHEVINESKYAEDKEESTSNLSKQNAYIKCKQTEYEKSVTGREVYRTRRMTMFKRVTSIENLKNHKERQRQYIKKNTAVKWDDDAADIKKTDSQCSYNCPKCTRCYSSKRSLDRHILTHDEKKFTCDKCNKHFFQLDKLIQHNKLHIVKEKPKPVLCKICNRNFRKTDTMVRHLNVHKRTNPKEVLSILKEIRDKRKLETITEPEKKEVENNKDKKETEEEFATNENNTLSVLKKRTLESKDKKCSGSLSTELLMSTENFDSFDHETLYRCNYCTKRYANEKSLQKHLQTHIEKRFVCNVCNMKFFRQDRLNSHKNRYGHNENSALEVQKPSDDKSAIKLINSWIREELDSDNEEKGFPCKICGKSYDTKKSLLKHQLSTHNTEAGNCTTCGKICACDEKEKNQHKSNERLKPYRCGECNKSFEKEVKLQKHIRIHERAKEQQDVNFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCHFCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHKFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQYNSYQSNSTQNMQTYCESETSSPTSIITVLPQVYLNNTNAINTQSSKTYMDNIQKINSQNIANINAVNTSDLHIHTNSEISDVSLAVKSFALIGQMFQS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01418508;
90% Identity: iTF_00228837;
80% Identity: -