Basic Information

Insect: Bombus breviceps
Gene Symbol: -
Assembly: GCA_014825925.1
Location: CM026183.1:678355-681536[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0029 0.21 11.9 1.9 2 23 261 282 260 282 0.96

2 11 0.002 0.15 12.4 0.2 1 23 290 313 290 313 0.95

3 11 0.0002 0.015 15.6 3.3 1 23 370 392 370 392 0.98

4 11 1.7e-06 0.00013 22.1 1.5 2 23 440 461 439 461 0.97

5 11 1.6e-05 0.0012 19.1 0.8 1 23 466 489 466 489 0.96

6 11 4.3e-06 0.00032 20.8 0.3 1 23 527 549 527 549 0.98

7 11 7.3e-07 5.4e-05 23.2 0.9 1 23 559 581 559 581 0.96

8 11 2.1e-06 0.00015 21.8 1.2 1 23 587 609 587 609 0.99

9 11 1e-05 0.00077 19.6 0.2 1 23 615 637 615 637 0.98

10 11 7.9e-05 0.0059 16.8 4.6 1 23 643 665 643 665 0.98

11 11 0.00031 0.023 15.0 0.4 1 21 671 691 671 692 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0029	0.21	11.9	1.9	2	23	261	282	260	282	0.96
2	11	0.002	0.15	12.4	0.2	1	23	290	313	290	313	0.95
3	11	0.0002	0.015	15.6	3.3	1	23	370	392	370	392	0.98
4	11	1.7e-06	0.00013	22.1	1.5	2	23	440	461	439	461	0.97
5	11	1.6e-05	0.0012	19.1	0.8	1	23	466	489	466	489	0.96
6	11	4.3e-06	0.00032	20.8	0.3	1	23	527	549	527	549	0.98
7	11	7.3e-07	5.4e-05	23.2	0.9	1	23	559	581	559	581	0.96
8	11	2.1e-06	0.00015	21.8	1.2	1	23	587	609	587	609	0.99
9	11	1e-05	0.00077	19.6	0.2	1	23	615	637	615	637	0.98
10	11	7.9e-05	0.0059	16.8	4.6	1	23	643	665	643	665	0.98
11	11	0.00031	0.023	15.0	0.4	1	21	671	691	671	692	0.94

Sequence Information

Coding Sequence: ATGGAAGTTTCGAAAAACGAGCAATTAGTTGATAGATATGAGAAAATTTATGGAGATGAATGCCGAATCTGTTTGAAAAAAGCTGTTGAAATTTgtgaactttttaaaaatggGGACGCTATTCCTCGAAAACTTATGGCCGTTGCTTCTGTACAGGTTGCAGAAGGAGACGGTTTACCACCAGTGATTTGCTTGCCTTGTAACCAGCGTTTAGATGCATCCTACGATTTTAAATgtcaaatacaaaattcagaTGAGAAGCTTCGTCAAATTCTAAAGCTGAAATCTTCTTCTAACGATTCTGTTACCAACGCCAGCACTATAGTTACAGCAATAATCGCTGATGTGATATCTAGTGTAATATCTtctgagaaagaaaatacagaaaaacaAGAAGTTTGTTCTACAAATTTCTGCAATGATAATTTTTGCTTTACGAAAGATGAAGCAGCTTTTTGTCTCAATTCAGAGAAGAACTTGTTTTGTTACGAAAAAGAATCATCACACAGTCGATTAAACGATACAGAACAAAGAAAGAGCctagaaaatgtaaatgtttataaaagtttattagaGGATGATTCTGTAAGACAAATCGATTCGATAAAACAAGAGTTTGTTTTATTAGACGATCATATGGTACAAACTAAAGATGTTCCATTAAAAGGAGAAGCGAGTATCGAAGAAAGTCAACAGATGTCAGAAGAGACATCAAAGATAGATAGTATTCaagatgatgatgatgatgaaaaACCATTAATTTCACGCACAACTAGATTACGCTGTACACAGTGTATCAAGTCTTTTCATACAAAAGTGGCTTTGCAGAGACACACCATTGTACATAAACGTAAAACCAAATTACGTTATGTTTGTTATGTTTGCGATAAACAATATTCTACGCTTGCAAAAGTGAAAAATCATGTTGCAATTAGCCACGAAGCTCgtgatagaaaagaaaatattcaacataAGAGAATTAGTTATGAGCAAAATAAAGCAATCGTGAGTGTAcaagataaaaagattaacAGTAATGTCCAAgataaaagaataaaaattcaaaaaaacgATGACTTTCCTAAGGAACAACGAAAAAGCTTAAAATTTACTTGCAAAGTGTGTTCAAAACAATTTACTTATCAAAAATCTTTTATCACACACGCTAAAAGTCATCCAGAGTATAAACTGGAAGAATTAGATGATTCGTCTCAATGTTGGGTAAAAGAAAGATGTACCGtggtggaagaagaagaaaatgaagaagaggaagacgaagaagatgaGGAAGATGAAAACCTTCCTGCTGAAAGTTTACAGTGCACTCAGTGTGGGAAATTATTTGcaacaaaaagaaatcttaaaaGGCATGTCTCCACACATAGTGgattaaaatatacgtgtGAAACATGTGGTAAAGGATTCTCAAGAGtggataaattaaaagatcatGAACAATCAAAGCACAAGGCTGAATTATTCGACAATTCTGATTTGGATGATAAAGAGGACACAGACAATGTAGTTAATAAAGGTGACTGTttagaaggaagaaagaaagaTCGTCACAATAGACCTCACAAATGTGCAATCTGCCCTAAATCGTTCGCGCAAGCACAATCGCTAGCGAATCACATAGAACGTCATAAGCGGGTAAAAGAAACTcaaaaaagatttctttgcGAAGTTTGTAGCAAGTGTTTTGCACAGAGTGGTTCTCTGGTTGCGCACATGCGTACACATACAGGAGTTAAGCCATATGTTTGTAACGTGTGTAGTAGAGCATTTACAAAGAGCACTTATCTACAATTGCATCTACGTACTCATAGTGGTGAAAAACCTTATATTTGCCAATATTGTAGCAGGGCGTTTGCACGTGCTAACACATTAGCACGGCACATAACGATGCATACAGGGGAAGCAAAATATCATTGtcaaatttgtacaaaatcaTTTAGAAGACTGACTTCGTTGAATGAACACACTTATACGCACACTGGGCAAAGACCATACGCTTGcaaaatttgtacaaagaGATATAACAATGCAGGGTCGCTATACGCGCATAGAAAGAAGTGCAAGGCACAGCAATTATCTAACCCTGGATTCGCGGTTTCCGTGGAAACCTGTACTGTATCAGAACAACAAGAAGTAGACGTTCCACAAGTTTTGATCTATTCCCACAGGAAATTAGTAGAGGACGCAACTGTTGGGCAAGTCACGCCTACACCACAGTACATGCTTGCAAATGTACACAATCAGAAGAATTTGGgatcaaatattatacaacCGTTTCCAGTGGATGATTCaaatgtttatacaattaatacGAAGCAATTTAAGAATCcctattatacaatttatccaaacatgtaa
Protein Sequence: MEVSKNEQLVDRYEKIYGDECRICLKKAVEICELFKNGDAIPRKLMAVASVQVAEGDGLPPVICLPCNQRLDASYDFKCQIQNSDEKLRQILKLKSSSNDSVTNASTIVTAIIADVISSVISSEKENTEKQEVCSTNFCNDNFCFTKDEAAFCLNSEKNLFCYEKESSHSRLNDTEQRKSLENVNVYKSLLEDDSVRQIDSIKQEFVLLDDHMVQTKDVPLKGEASIEESQQMSEETSKIDSIQDDDDDEKPLISRTTRLRCTQCIKSFHTKVALQRHTIVHKRKTKLRYVCYVCDKQYSTLAKVKNHVAISHEARDRKENIQHKRISYEQNKAIVSVQDKKINSNVQDKRIKIQKNDDFPKEQRKSLKFTCKVCSKQFTYQKSFITHAKSHPEYKLEELDDSSQCWVKERCTVVEEEENEEEEDEEDEEDENLPAESLQCTQCGKLFATKRNLKRHVSTHSGLKYTCETCGKGFSRVDKLKDHEQSKHKAELFDNSDLDDKEDTDNVVNKGDCLEGRKKDRHNRPHKCAICPKSFAQAQSLANHIERHKRVKETQKRFLCEVCSKCFAQSGSLVAHMRTHTGVKPYVCNVCSRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCQICTKSFRRLTSLNEHTYTHTGQRPYACKICTKRYNNAGSLYAHRKKCKAQQLSNPGFAVSVETCTVSEQQEVDVPQVLIYSHRKLVEDATVGQVTPTPQYMLANVHNQKNLGSNIIQPFPVDDSNVYTINTKQFKNPYYTIYPNM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00118159;
90% Identity: iTF_01417854;
80% Identity: -