Basic Information

Insect: Bombus bifarius
Gene Symbol: -
Assembly: GCA_011952205.1
Location: NW:11468-21622[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 2.1 1.3e+02 2.6 0.2 2 19 99 116 98 119 0.88

2 11 0.0065 0.42 10.5 0.7 1 22 125 146 125 146 0.95

3 11 0.0077 0.49 10.2 6.7 1 23 156 179 156 179 0.93

4 11 2.9e-07 1.9e-05 24.1 3.2 2 23 497 519 496 519 0.96

5 11 1.4 92 3.1 0.3 5 23 526 545 525 545 0.94

6 11 0.001 0.067 13.0 2.0 2 23 552 573 552 573 0.96

7 11 0.87 56 3.8 3.7 1 20 600 619 600 621 0.89

8 11 0.0031 0.2 11.5 2.1 1 22 722 743 722 743 0.96

9 11 0.0076 0.49 10.2 1.8 2 23 751 773 751 773 0.93

10 11 0.0068 0.44 10.4 3.7 1 23 783 806 783 806 0.95

11 11 4.3 2.8e+02 1.6 0.1 3 19 827 843 826 845 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	2.1	1.3e+02	2.6	0.2	2	19	99	116	98	119	0.88
2	11	0.0065	0.42	10.5	0.7	1	22	125	146	125	146	0.95
3	11	0.0077	0.49	10.2	6.7	1	23	156	179	156	179	0.93
4	11	2.9e-07	1.9e-05	24.1	3.2	2	23	497	519	496	519	0.96
5	11	1.4	92	3.1	0.3	5	23	526	545	525	545	0.94
6	11	0.001	0.067	13.0	2.0	2	23	552	573	552	573	0.96
7	11	0.87	56	3.8	3.7	1	20	600	619	600	621	0.89
8	11	0.0031	0.2	11.5	2.1	1	22	722	743	722	743	0.96
9	11	0.0076	0.49	10.2	1.8	2	23	751	773	751	773	0.93
10	11	0.0068	0.44	10.4	3.7	1	23	783	806	783	806	0.95
11	11	4.3	2.8e+02	1.6	0.1	3	19	827	843	826	845	0.88

Sequence Information

Coding Sequence: ATGTTAGGAGTTGAGGAAAAGTTTCTTAGTAATACTAATGGAGCCcCTTCTGAATATGcaataacaataaaagaagAGCCAATCGATCCAGAGGTCTGCGATGATTTGTCGTCAGTTGATACGAATACAgggaataaaaatgaaacagcgACGTTTAAAGGTGAATCTTCGGACgacatttattgtaaaaatgaagaatCCGCGTTTCCTCAAGAAAGTAcgtatttagaaaataacaaatcgGATTCTGATAAACGAAAAAGTAAACGTAAAGTACCTTCAAACAACAGAATAAGTTGCAACGTTTGTTTGTTAACTTTTCAAGCTAAACATTTATTGGAACTgcataataaattgtatagcTGTAATGTATTTAAGTGTGATAATTGCACTGCGATCTTCACTATGcatatttcattaatacgTCATTTAAAGAAGCAATGTTGTACGAAAAAATTGTCTGGATATAgatgtaatttttgtaatcgAATGTTTTCCTATAAAAGACATGTTCAATCTCATTTATTCCATGCGCATGGGAACGCAATACTTTCTGGTGAAAGCAAAATCACGAAAACATCTCCTGAATCGTTAGGAAAGTCGAATCATTCGGATGGTATTGTGATGGCAGAATCAAATACTTCACACAGTCGCTGCCCAAAAAACGTAAATAGCTCAATTAATATATCTTTGAAACTATCTAATGGTTCAAACAATACAACCACCAAGTGTTCGAGCAGTAATATCAAGTCTACGCATCCGAAATGGTTAAACGATTCGCATGGTACACCTTCGAAAAGAATGAAGCAGTCCGTCCTTACAGACTTCATATCGCCGTACAAAGACAAACCGAATGACAAATGGGTTAGCCCGGAAAAAGTTATCGATACGGAGAATATTCCTGTTACTGCGACTATTATTCCAACTTCAACGCTCGAGACATTTAGTAACAAGACATCAACGGCTGCAGAAGTTATTCAGATGTCTACTTCTGTTAAGCGAATCGAATCTCCTGTTAGGAAAATATCATCTGTTCAAACTCATgtgaatttaaaaacaataatatcTTTATTCAGGAACCAAATAAAAACTGAATCTGAAAGCTCGAATACCTCGCACAATATGTCTTACAACCTTAGGCCAGTGAAAAGATGTTCTTCTTTATATGATTCTCGCGATTTATTGGAGTGTAAAGAATGTGTGGTCCGCTTGGAGAAATGCGACAAATTCTTGGAGCCTACTAGTTTTGTATCaaacgaagacgaagacgaagacgcTTTCAAACAAGCAGTATCGAAAAACGTGAAAGAGGAATTTGAAGGTTTTCGCGAAACAAGCTCGACATGTAACTTGCCTTTGAAAGCTGACACGATTGCGTCAAAGCGATTCAAtgaatttgtaaaatcttTCGCTGATAGATTAATCGTACCTCAACAAGAATCGGTTGAATTTCAGAAGAACTTTAAAGTCTGTCaacagaaaataattcaatgtcatatttgtaaaaaatcgTTTTCTTCGAAGGAAAACCTGCGCGAGCACATGAAATTGTTCCATACGATTTACATTTCGAGCATATGCAACGCGCGTTACACGTCCATGAATAAGTTACTAACTCACTATCTACGTCAGCATGGTGTGTTTAAACGAAGGGAATGTTGCGTATGTTATGAGAAGTTTGACACGTCGACACTGTTGAAGCGGCACATGATTCTGCATTGTTTGAAGACCATAAGATCAAAAAAGGACGCTCCACCAGTTGATgttgaaataaattgcaatGCATTCAAGAAACAACACAAATGCAAAGGTTGTCGCAAACGATTTTGGCTATACTCATGTTTGAAACAACACGAGAATGTATGTCGTCGAATGAAAGTGTTAAGAAATAAACAACGCGTACCTCGTGTAAACCATTCGTCTCGGTCCTTGAAAGAACCAAGTGACATGGAACTCGGCATAGTACAGTCGCCTGATTTGGAACAAACGTTGGATGTTTCGGGTGGGACGACAAgatctttgaaaaattatttgactCCGAGTGCGCTTAATACGGGTGATACTTTCTCTTCGTCATTCGATACAGCTGCAAAACACAAAAGGTTACTTAATGGGATTGCATGCGTAAAGGGTCACCAAGCGGACAAGATGAACAGAACAAAGTTTCCTTGCACTACTTGTGGAACACAATTccaaacatttaaaaatttgtgcATACACGAGCGCACCTATCGTCAAACAGCCACAGAAAAGTGTAACGTTTGTAACACGATGTTTTCCACTAAAAGATTTTTACAGTTTCACATGCTTGCTACTCATGCGCCTTCGTGTTCGGTGAACTACAAATTCTTTTGTAAGTTCTGCAATCAAGGATTTGTTAAGAAACAGAGTCTTCAAATTCACGAACGACACTTGCATATTGGGCAAGGTTCTAGGCTGGTGCTGAATTCCGATTGTGTTGTGGAAGATAAACCAATCTGTAATATATGCCATTTGTTATTCGAATCCTACGAACGTTTAGTCGAGCATAACACGTATTATTACAAGGGCAATGATTTTTTATGCGCAATATGTGGTCgtttgaaaatcaattttcacgGTACTATACTGAAGAATCGGCCTAGATTGAGACGTACAATAAACATGCCAAGTACACATACACATACGAAGCAAATGATTTCAAAGTGTCCTTTAAGTCATaagttaCCGAGAATGAAGCAAAAGCAAGGCAACGGAACCCACCTTAGAATTAACAACAAAATCCaccaaaagaaaaataaatccgcAAAAAGCGGCCAAGGAAATCAACAGCTTAAGACTTTCCGCGCAAAAGACGCGGAAACTCAACCCTCAACCAAACCTAGTTGCCAGGACCAAAGGATTAGAAGATATCCTAAAAACACAAAACAAGAGTATCTCTCCGCCCAGGACGAAGGTACTAAGGAAGCCAGAAACATGAGACCCATAAAAGCTGCCTCGCCCCCAGCGATTACAACACAAAACAGATTTAGCTTACTAGAGTCAGAACCACATCCACAATCACAGCCGGGACCAGCAAACTACCCAACATCAAGCTCAACGCTAGAGCAAATAACACAAAAACCAAGTATTACGTGGCAAAATGGGAAAGCACAGTCCCACCACACCGCCAAAGCAATCAACACCGCAGGGGCCACAGGCCTCATCGTACAACCCAGGAGGCCCAGCGCCACCAGCATCACCACGGGGGGGGGGGCACCCGACGGGCCAGATACACCGCAGAGGAGCAGAAAGTATCCAACATCAATCAATTCCATATCAAAAGGATACACTCAGCTCAATAAACCGGAAAACTACTATATAATAGCAGGCGCCTTAACGCAAAACATACAACGAAACAAACAACAACGtggaaaaacgaaacaaacaaCACGAGAGGCAACTTCATTAAAAACTGGCTAG
Protein Sequence: MLGVEEKFLSNTNGAPSEYAITIKEEPIDPEVCDDLSSVDTNTGNKNETATFKGESSDDIYCKNEESAFPQESTYLENNKSDSDKRKSKRKVPSNNRISCNVCLLTFQAKHLLELHNKLYSCNVFKCDNCTAIFTMHISLIRHLKKQCCTKKLSGYRCNFCNRMFSYKRHVQSHLFHAHGNAILSGESKITKTSPESLGKSNHSDGIVMAESNTSHSRCPKNVNSSINISLKLSNGSNNTTTKCSSSNIKSTHPKWLNDSHGTPSKRMKQSVLTDFISPYKDKPNDKWVSPEKVIDTENIPVTATIIPTSTLETFSNKTSTAAEVIQMSTSVKRIESPVRKISSVQTHVNLKTIISLFRNQIKTESESSNTSHNMSYNLRPVKRCSSLYDSRDLLECKECVVRLEKCDKFLEPTSFVSNEDEDEDAFKQAVSKNVKEEFEGFRETSSTCNLPLKADTIASKRFNEFVKSFADRLIVPQQESVEFQKNFKVCQQKIIQCHICKKSFSSKENLREHMKLFHTIYISSICNARYTSMNKLLTHYLRQHGVFKRRECCVCYEKFDTSTLLKRHMILHCLKTIRSKKDAPPVDVEINCNAFKKQHKCKGCRKRFWLYSCLKQHENVCRRMKVLRNKQRVPRVNHSSRSLKEPSDMELGIVQSPDLEQTLDVSGGTTRSLKNYLTPSALNTGDTFSSSFDTAAKHKRLLNGIACVKGHQADKMNRTKFPCTTCGTQFQTFKNLCIHERTYRQTATEKCNVCNTMFSTKRFLQFHMLATHAPSCSVNYKFFCKFCNQGFVKKQSLQIHERHLHIGQGSRLVLNSDCVVEDKPICNICHLLFESYERLVEHNTYYYKGNDFLCAICGRLKINFHGTILKNRPRLRRTINMPSTHTHTKQMISKCPLSHKLPRMKQKQGNGTHLRINNKIHQKKNKSAKSGQGNQQLKTFRAKDAETQPSTKPSCQDQRIRRYPKNTKQEYLSAQDEGTKEARNMRPIKAASPPAITTQNRFSLLESEPHPQSQPGPANYPTSSSTLEQITQKPSITWQNGKAQSHHTAKAINTAGATGLIVQPRRPSATSITTGGGAPDGPDTPQRSRKYPTSINSISKGYTQLNKPENYYIIAGALTQNIQRNKQQRGKTKQTTREATSLKTG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -