Bbif008513.1
Basic Information
- Insect
- Bombus bifarius
- Gene Symbol
- Prdm15
- Assembly
- GCA_011952205.1
- Location
- NW:1161472-1164778[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.1e-05 0.0007 19.2 3.9 1 23 253 275 253 275 0.98 2 12 0.0017 0.11 12.3 4.5 1 23 280 302 280 302 0.96 3 12 0.00057 0.037 13.8 1.4 3 23 313 333 312 333 0.98 4 12 3.9e-06 0.00025 20.6 2.1 1 23 426 448 426 448 0.98 5 12 0.0013 0.081 12.7 1.9 1 23 453 477 453 477 0.90 6 12 8.8e-07 5.6e-05 22.6 1.2 1 23 515 538 515 538 0.96 7 12 8.8e-07 5.6e-05 22.6 0.8 1 23 571 593 571 593 0.99 8 12 0.00012 0.0075 16.0 4.0 1 23 607 629 607 629 0.96 9 12 0.00011 0.007 16.0 4.7 1 23 635 657 635 657 0.98 10 12 0.00097 0.062 13.0 3.2 1 23 663 685 663 685 0.98 11 12 6.8e-05 0.0044 16.7 6.6 1 23 691 713 691 713 0.97 12 12 0.00015 0.0099 15.6 0.3 1 21 719 739 719 740 0.93
Sequence Information
- Coding Sequence
- AtggaaatcgaaaataaaacaacaatttCATCAAATGATTGTGGTAATGTTTGCCGTGTTTGTCTTGCAACAAATCAAAATAATCAATGCATTTTCGATAGTAAACGAAGTGATTCAATTAATGAAAGTACAATTGATTTGTCTGAAAAACTTCGTTTGTGCAGTGGTGTGGAGGTACTGGAAAATGATGGTTTACCTTCCACTATTTGCGCGAAATGTATATTAAAGATCAATGATGCCCATGAATTAAGAAGGCAATGCCAGCAATCCGATATCCAATTAAGAGAATTGTATGGTAaagtggaaaaaatatataatatcaatttatGTAAAACTACAAAAGATAAATATTCCCAGACTGATTATTCATTTACTTCTGATTTAATCAAAATTGAAGCTGATTCATTTTCTGCAATGGGTTATAATCCTTATCCAATGGTAATGCTTAATTCTAGTACTAAAGACATAAAAGATCATGAAGTGATTAATGAATCAAAGTATGCAGAAGATAAAGAATCCACTAGTAacttaaataaacaaaatgcCTACATTAAATGTAAACAAACAGAATATGAAAGAAGTGCTACAGGAAGAGAAGTTTATCGAACAAGAAGAATGACCATGTTTAAAAGAGTAACatctatagaaaatttaaaaaatcataaagaaagacagagacaatatataaaaaagaatacagCTGTTAAGTGGGATGATGATGCAGCAGATATTAAAAAGACAGATTCTCAATGTTCTTATAGTTGCCCAAAATGTACCAGGTGCTATTCCAGCAAAAGATCTTTGGATAGACATATATTAACTCATGATGAAAAGAAATTCACATGTGATAAATgtaacaaacatttttttcaactTGATAAATTGATACAACATAATAAACTACATATTGTTAAAGAAAAACCTAAACCAGTATTgtgtaaaatatgtaatagGAATTTTAGGAAAACTGATACTATGGTAAGACATTTAAATGTTCATAAAAGAACTAATCCAAAGGAGGTCCTTTCTATTCTGAAAGAAATtagagataaaagaaaattggaaaCCATAACTGAAccaggaaaaaaagaagttgaaaataataaagataaaaaagaaacagaggaagaatttgcaacaaatgaaaataatactttAAGTGTCCTAAAAAATAGGACTTTAGAATCTAAAGATAAAAAGTGTAATTCTGACTCATTATCTACTGAACTACTGATATCTACTGAAAATTTTGATTCTTTCGATCATGAGACACTTTATCGATGTAACTACTGTACCAAGCGTTATGCGAACGAAAAATCTCTTCAAAAACATTTACAGATTCATATTGAAAAAAGATTTGTTTGCAATGTATGTAATATGAAATTCTTTCGCCAAGATAGATTAAATAGTCATAAAAATCGATATGGACATAATGAAAATTCAGCATTAGAAGTGCAAAAACCAAGTGACGATAAGTCAgccattaaattaataaacagtTGGATTCGAGAGGAGCTTGATTCAGATAACGAGGAAAAGGGTTTTCCTTGTAAAATTTGTGGAAAATCATACGATACAAAAAAATCCTTACTAAAGCATCAATTAAGTACGCATAATACAGAAGGAGAAAACTGCACAACGTGCGGTAAGATGTGTGCCTGTGACGAGAAGGAGAAGAATCAACATAAATCAAACGAAAGATTAAAACCATATCGATGCGGAGAATGTAATAAATCCTTTGAAAAGGAagttaaattacaaaaacatATAAGAATCCACGAGCGCGCTAAGGAACAGCAAGatgtaaattttaaacgatttttatGTCACATATGTAGCAAAACCTTTAGACAAAATACAGGTCTCATGTTCCATATGAGGACGCATACGGGATATAAACCTCatgtttgtaaatattgtGGAAGAGGATTCACTTCAAATTCTAATTGCATCAATCATGAAAGAACTCATACTGGTGATAGACCATTCGTTTGTCATTTTTGTAGTGCTGCTTTTGCCAAATCATGTACGCTTAAAGCACACATTACAACACATACTGGAGAAGCAAATTATCATTGTAAAACTTGCGGTAAATCGTTTAGGCGACTAAAGTACTTAAAAGAACACAAATTTACGCATACGGGGGAAAAACCATATGCTTGTAAGATTTGTGGCACTGCATATAGCCATTCTGGTAGTTTATTCGTACATGAGAAAAAGTGTAAAGCACAATATAACAGTTATCAATCCAATTCGACACAAAATATGCAAAGCTATTGCGAATCGGAAACGTCTTCACCAACCTCTATCATTACCGTTTTACCGCAagtttatttgaataatactAATGCGATAAATACACAAAGTAGCAAAACCTACATGGACaatattcaaaaaataaattctcagAATATTGCTAACATAAATGCTGTTAATACATCAGATTTACATATTCACTCGAATTCCGAAATTTCTGATGTTTCTCTAGCTGTTAAAAGCTTCGCTCTTATCGGACAAATGTTTCAATCGTAG
- Protein Sequence
- MEIENKTTISSNDCGNVCRVCLATNQNNQCIFDSKRSDSINESTIDLSEKLRLCSGVEVLENDGLPSTICAKCILKINDAHELRRQCQQSDIQLRELYGKVEKIYNINLCKTTKDKYSQTDYSFTSDLIKIEADSFSAMGYNPYPMVMLNSSTKDIKDHEVINESKYAEDKESTSNLNKQNAYIKCKQTEYERSATGREVYRTRRMTMFKRVTSIENLKNHKERQRQYIKKNTAVKWDDDAADIKKTDSQCSYSCPKCTRCYSSKRSLDRHILTHDEKKFTCDKCNKHFFQLDKLIQHNKLHIVKEKPKPVLCKICNRNFRKTDTMVRHLNVHKRTNPKEVLSILKEIRDKRKLETITEPGKKEVENNKDKKETEEEFATNENNTLSVLKNRTLESKDKKCNSDSLSTELLISTENFDSFDHETLYRCNYCTKRYANEKSLQKHLQIHIEKRFVCNVCNMKFFRQDRLNSHKNRYGHNENSALEVQKPSDDKSAIKLINSWIREELDSDNEEKGFPCKICGKSYDTKKSLLKHQLSTHNTEGENCTTCGKMCACDEKEKNQHKSNERLKPYRCGECNKSFEKEVKLQKHIRIHERAKEQQDVNFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCHFCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHKFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQYNSYQSNSTQNMQSYCESETSSPTSIITVLPQVYLNNTNAINTQSSKTYMDNIQKINSQNIANINAVNTSDLHIHSNSEISDVSLAVKSFALIGQMFQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01418508;
- 90% Identity
- iTF_00228837;
- 80% Identity
- -