Basic Information

Insect: Bombus bifarius
Gene Symbol: -
Assembly: GCA_011952205.1
Location: NW:1537045-1541056[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.013 0.86 9.5 0.6 2 23 124 145 123 145 0.93

2 11 0.00015 0.0095 15.6 2.9 2 23 216 237 215 237 0.95

3 11 3.7e-06 0.00023 20.7 3.3 1 23 382 404 382 404 0.97

4 11 4.4e-07 2.8e-05 23.6 0.8 1 23 410 432 410 432 0.98

5 11 7.8e-07 5e-05 22.8 1.1 1 23 438 460 438 460 0.97

6 11 0.00022 0.014 15.1 1.5 1 23 476 498 476 498 0.97

7 11 6e-09 3.9e-07 29.4 1.4 2 23 505 526 504 526 0.98

8 11 9e-08 5.8e-06 25.7 3.9 1 23 532 554 532 554 0.98

9 11 1.3e-06 8.6e-05 22.1 2.3 1 23 560 582 560 582 0.96

10 11 4.9e-05 0.0032 17.1 4.4 1 23 588 610 588 610 0.96

11 11 2.3e-05 0.0015 18.1 5.0 1 23 616 638 616 638 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.013	0.86	9.5	0.6	2	23	124	145	123	145	0.93
2	11	0.00015	0.0095	15.6	2.9	2	23	216	237	215	237	0.95
3	11	3.7e-06	0.00023	20.7	3.3	1	23	382	404	382	404	0.97
4	11	4.4e-07	2.8e-05	23.6	0.8	1	23	410	432	410	432	0.98
5	11	7.8e-07	5e-05	22.8	1.1	1	23	438	460	438	460	0.97
6	11	0.00022	0.014	15.1	1.5	1	23	476	498	476	498	0.97
7	11	6e-09	3.9e-07	29.4	1.4	2	23	505	526	504	526	0.98
8	11	9e-08	5.8e-06	25.7	3.9	1	23	532	554	532	554	0.98
9	11	1.3e-06	8.6e-05	22.1	2.3	1	23	560	582	560	582	0.96
10	11	4.9e-05	0.0032	17.1	4.4	1	23	588	610	588	610	0.96
11	11	2.3e-05	0.0015	18.1	5.0	1	23	616	638	616	638	0.99

Sequence Information

Coding Sequence: ATGTTCATCGTTACGAAAGAAATTGACAGCGAAAATATTGGTAAATTATGCCGTACTTGTCTAAGAGAGGATGGCGACAAAATGGTTTGTTTGTTCGTGGGACCAGCTGAGTCGTCTCTCGCTGCTAAATTGCGATCTCTCTCCTGTCTCGAAGTATGGCAGGGCGATGGTCTTCCAGAAAAAATGTGCGACCGTTGTGTAACCAGAGCGGAATCTGCTCTATTATACAGGGAACAATGTCGTGCAGCTGACAGAGCGTTAAGACAAGCAGTTTTAAAGGTTTCTGGTCTGGCTTCATACGCAGCAGgttacaaattatatcaaCAAAATCAGGGTTTCATGCCTGTTCAAAATTCCCATAAGACTTTGAAATGTATAGAATGTGGAGCAGTATTTATGACCTACCAAGAGCTCTGTGCCCACAACAGATCACATTTACCTTTTGTCCAAGACGATATACCTATGCAACATATGCACATAGTAGAATCACAAAATCCATACTTCAATCTTAACTTTGGTCACCTGAGCTCTAATTTAACCAACGAGAGCATTCAACACACGCAATTGTCTCCATTGATTAGGTCAAACGTGATGCAAATGATACCAACGAACGGGGAAAACCCTAGCCGAGCTGCTTGCGCGCTACATTGTTCTTTGTGCAATCGCACGTTCACCAATAGAACACAATTAATAAGTCATAGTATCACCCACAACTCGGAAAGCATAGAAGTGCCCTGCGATAACGAGCATATAGATATCTGCGAGAATTCAAATCAAATTCCTCAAAACTTGAGTTACGAGAGGTCGATTAATTCCGTCGGGAATACTATCCAAAACTTATCTTATCATAGGTCAACGACGAACGATAATAACGAAATACAAAACTTGGAATTTCCAGAAAATATGGATTTGGGAGACGAAGTTCGAGAGGGTAGCCCTCGTGTAAGGAACACAGCGATGTCTGATTCAGATACATATAATATAGCTGTTTATCGCGGTGTAAGATTTGCGAAAAGTCTCGAACGTACGGACAACAGAGAGAGTATCGATAGATATCAATCGTGCTCTTCGAATCTTAATTACAGTAAACAGCAGATCGAGAGCGAACATTCTGAAAATGTGCAACAGCTACAGGCGAAAAAGTACAAATGCGACGTATGCTCCAAGTCGTTTTCTCAAAAATCTAAATTGTTAACGCACCGATTCTCGCACTCTGGTCAGCAACCTTTCAAGTGTCCCAATTGCGTGAAAGGTTACTCATCGAAGAGCAAACTAAACGCTCATATGCGATTACACACGAAAACCAATGTACACCCGTGTAAAATGtgtgataaaatatttgcatatccTTCTTACCTGCAGGAACATTTAAAAACACACAGACGAAGCGGCAATAGCAACGGGAGAAACGAGGAGAACAAAGCTTTCGAATGCGTCAGCTGCAAGAAGAGATTCCGTTTATTGAAAAATCTGAAAGCTCACGAACGACTTCACACAGGGAAAGGTCTGATGCGATGCGAAATATGCGACAAGACATTCAGtcgaaattataatttaaagattCATTTGAGAACGCATAAAGCAGCCAAACCGCATAAGTGCGAGTACTGTAACAAATGTTTTGTTCAAAAAGGCAATCTCGCCGAACATATGAGAATTCACACGAAGGTAAAACCATTCGAATGTAAAGCGTGTGGAAAGCGGTTCTCGCAGTCAAGTCACTTGAAGAATCATGAAGCATCCCATACTACTGTTAGACAACATCAATGTCGATTGTGCGGGAAACGATTCAAACTTGCGAATCATTTGAAGAGACATCTGATTTTACACAATGGTACAAAGTCatataaatgtcatcagtgTAATCAGTTGTTCTCTCAAGCGTTTAGTCTCACGAGGCACTTGAAAAGGCACGATTCGCATACTTAA
Protein Sequence: MFIVTKEIDSENIGKLCRTCLREDGDKMVCLFVGPAESSLAAKLRSLSCLEVWQGDGLPEKMCDRCVTRAESALLYREQCRAADRALRQAVLKVSGLASYAAGYKLYQQNQGFMPVQNSHKTLKCIECGAVFMTYQELCAHNRSHLPFVQDDIPMQHMHIVESQNPYFNLNFGHLSSNLTNESIQHTQLSPLIRSNVMQMIPTNGENPSRAACALHCSLCNRTFTNRTQLISHSITHNSESIEVPCDNEHIDICENSNQIPQNLSYERSINSVGNTIQNLSYHRSTTNDNNEIQNLEFPENMDLGDEVREGSPRVRNTAMSDSDTYNIAVYRGVRFAKSLERTDNRESIDRYQSCSSNLNYSKQQIESEHSENVQQLQAKKYKCDVCSKSFSQKSKLLTHRFSHSGQQPFKCPNCVKGYSSKSKLNAHMRLHTKTNVHPCKMCDKIFAYPSYLQEHLKTHRRSGNSNGRNEENKAFECVSCKKRFRLLKNLKAHERLHTGKGLMRCEICDKTFSRNYNLKIHLRTHKAAKPHKCEYCNKCFVQKGNLAEHMRIHTKVKPFECKACGKRFSQSSHLKNHEASHTTVRQHQCRLCGKRFKLANHLKRHLILHNGTKSYKCHQCNQLFSQAFSLTRHLKRHDSHT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01539757;
90% Identity: iTF_00231469;
80% Identity: iTF_00232120;