Basic Information

Insect: Boloria selene
Gene Symbol: -
Assembly: GCA_905231865.2
Location: HG993155.1:5362114-5372487[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 3.2e-05 0.003 18.6 3.8 1 23 262 284 262 284 0.99

2 10 0.49 46 5.4 1.8 1 23 292 315 292 315 0.94

3 10 0.00022 0.02 15.9 3.5 1 23 415 437 415 437 0.99

4 10 2.7 2.5e+02 3.0 1.9 2 23 446 468 445 468 0.95

5 10 0.48 45 5.4 2.2 1 20 501 520 501 524 0.77

6 10 0.055 5.2 8.4 0.0 2 20 543 561 542 563 0.93

7 10 0.021 2 9.7 0.2 3 23 605 626 603 626 0.96

8 10 9.7e-07 9.1e-05 23.3 1.4 1 23 635 657 635 657 0.98

9 10 9.3e-05 0.0087 17.1 0.7 1 23 663 685 663 685 0.96

10 10 1.6e-05 0.0015 19.5 4.6 1 23 691 714 691 714 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	3.2e-05	0.003	18.6	3.8	1	23	262	284	262	284	0.99
2	10	0.49	46	5.4	1.8	1	23	292	315	292	315	0.94
3	10	0.00022	0.02	15.9	3.5	1	23	415	437	415	437	0.99
4	10	2.7	2.5e+02	3.0	1.9	2	23	446	468	445	468	0.95
5	10	0.48	45	5.4	2.2	1	20	501	520	501	524	0.77
6	10	0.055	5.2	8.4	0.0	2	20	543	561	542	563	0.93
7	10	0.021	2	9.7	0.2	3	23	605	626	603	626	0.96
8	10	9.7e-07	9.1e-05	23.3	1.4	1	23	635	657	635	657	0.98
9	10	9.3e-05	0.0087	17.1	0.7	1	23	663	685	663	685	0.96
10	10	1.6e-05	0.0015	19.5	4.6	1	23	691	714	691	714	0.98

Sequence Information

Coding Sequence: ATGTTTGAATTGAAAGCATGCATTGTATGCTTAAAAAGTGATGTGAAAGTTTTTAGTATGAATACAGGTCAACTAAGAAATGAATATAATTTAGCATCAGGTTTAAAAACTAATAGCCATAATGGATTACCAGAGTATTTGTGTTATCAATGTGTAGCTTATGTAAGAAATTTCAAAAAGTTTAGAGATAAATGTCAACGCACATATTATGCTTTGCAAGAAGTACTACATAGAAATAAAGAGATCACCAAAAGCATCATTGAGGAAATAGATACAAAAATATTAAAAATAGAGCCAAATTTGTCATATCTGACTCTAAATCATTCAAGGACTAAATATGAAAGAGCACAATTTAAGTGGATAAAACAAAACCGAGTAGGATTAAAACATCAAGATGAAATTCCTGTTTTTCAATATAGTACAACATCTGATGATCTCACTTTTGAAGTTACTAGAAATAAAGCTAAGCTTTTAAAGGACTTAATAGAAGAATGTGTTACAGAAGAACATAAAACTATCTCACCTTTGAAACCATCACTTGAAAGCGAAAAAACAGTTGATGAAACAGAAATGGATGATTGTATCAATGACAATAATTTTGATAATTGTGAACAAAATACTGATAATGATAATAATGAAATTAATATTACTAATGAAGAAAAATCTAAAGATCAAGAAGCAGATGGAATGAATTTAGAAGAAGAATATGCCACATTGGTCCCCATATCAATAGTAGAAGCAAAGGCAGTTGTAGATGTGTATAAAATGTTTGCACACGGCAAGTTTCAATGCACTGTATGTGGAAAGGCTTGTTGTAATGAAAACCGTCTTAATGTTCACATGAGAATGCATGATCCACATACAAGTGGATCATTCTACTGTGGCCTATGTTATTATTACTATGGAACAGATTTTCTGTTAAAAAAACACATGACTGAAAAACATATGTATAAATATTTATGTAAAAAGTGTCCTGAAGTTAATTTTGATAGAACAGCGGCAAAACAACATTTTATATATGCCCATCTACAGAAAAGTTCTAAAAAACGTACAAGCTGGTGTGAATCTCAAACTTCTACAGTTATTAAAGGCAATGAGAAAAATAACTTATTTATACCGCAAAACTTAAGAAATATCAAGCTATTACCTCAAGATTTTCCCTTATACACACCGATCAGCCAAGAAGAACAATATGCATTAATCAAGGAAAGGCAGAAAACTAAAAACTATATAGACTCGCCATTTAAATGTGAATACTGTTATAAAGGCTTTAGGGAAGAAATAACATATAAAAAACATATGAAAAAGCATGATCCCGCACATTCAGGTAAACTACAATGCGATGCCTGCAAAATATACTGTCAAGACGCAAGAAAAATGTACAAACACATGAACATGAGTCATTTATTCAAATATTCGTGTCAAATGTGCAGCTACACTTGTTACAGCAGGAAAGCGTCAACACGGCTGACCCACATCCGCATCAAGCACCCGTCCACGTACATCTGCAACCTCTGCGGGCACAGCTTCGTCAGCGACAATGGCCTCTACTGCCACAAGAAGCTCGCTCATACTAAACAGGAGGTAGAGGAGTGCTCGGCCGCGCCAGACCAAGCGAGCGCGCTGTACTGCGCGGAGTGCGACGTGCAGTTCCGCGACGTGTCCGCGCTCGCCACGCACTACGGATCCTCCGTCAAGCATGCCGACACCAACCTATCTATTAAAACGTTAAAAAAAGAAGGCAACCGCCGCGGGCGGCCGCGGACTTTGGAAAGCTGCATCGTCAACACCGGCATGCCCACTTCCTCTATTTGCGAGATTTGTAACAAGAATCTGCCGAACGACTCTCAAGCGCGCCGCCACTACGAGACGGACCACCCCGGCGCGCGCTTCCTTAAAAGATATATGTGTGACATCTGTGGACACACCACCAGGCAATACGCCAACCTGACGGTGCACATGCGCACGCACACGCACGAGAAGCCGTACGCGTGCCCGCACTGCGACCGCCGCTTCAGCATGCCCAGCAACCGAGACCGACACCTCGTGGTCCACACGGGCGAGAAGCGCTACCAATGCCAACACTGCCACCGACGCTTCACTCAGAGCAGCGCGGTCAAGCTGCACATACAGACTGTACACCTCAAAATCCCCTACGCGCCCTGGGATAAGAAAAACCGGAAGCGTCGTAAAGAACCGGAAGCCAACCCCATCCTGCAAACGAACCTCCCCCCCGCGCAGCTACCTCCCCCCGCGCCGCCCCTTCACCCCGCACAGAAACTCCTCCTAGACTCAACCCACGGGAACTATCTAAGCGCGTATATAACTTACAATGAATAG
Protein Sequence: MFELKACIVCLKSDVKVFSMNTGQLRNEYNLASGLKTNSHNGLPEYLCYQCVAYVRNFKKFRDKCQRTYYALQEVLHRNKEITKSIIEEIDTKILKIEPNLSYLTLNHSRTKYERAQFKWIKQNRVGLKHQDEIPVFQYSTTSDDLTFEVTRNKAKLLKDLIEECVTEEHKTISPLKPSLESEKTVDETEMDDCINDNNFDNCEQNTDNDNNEINITNEEKSKDQEADGMNLEEEYATLVPISIVEAKAVVDVYKMFAHGKFQCTVCGKACCNENRLNVHMRMHDPHTSGSFYCGLCYYYYGTDFLLKKHMTEKHMYKYLCKKCPEVNFDRTAAKQHFIYAHLQKSSKKRTSWCESQTSTVIKGNEKNNLFIPQNLRNIKLLPQDFPLYTPISQEEQYALIKERQKTKNYIDSPFKCEYCYKGFREEITYKKHMKKHDPAHSGKLQCDACKIYCQDARKMYKHMNMSHLFKYSCQMCSYTCYSRKASTRLTHIRIKHPSTYICNLCGHSFVSDNGLYCHKKLAHTKQEVEECSAAPDQASALYCAECDVQFRDVSALATHYGSSVKHADTNLSIKTLKKEGNRRGRPRTLESCIVNTGMPTSSICEICNKNLPNDSQARRHYETDHPGARFLKRYMCDICGHTTRQYANLTVHMRTHTHEKPYACPHCDRRFSMPSNRDRHLVVHTGEKRYQCQHCHRRFTQSSAVKLHIQTVHLKIPYAPWDKKNRKRRKEPEANPILQTNLPPAQLPPPAPPLHPAQKLLLDSTHGNYLSAYITYNE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00160143;
90% Identity: -
80% Identity: -