Bsel022837.1
Basic Information
- Insect
- Boloria selene
- Gene Symbol
- -
- Assembly
- GCA_905231865.2
- Location
- HG993159.1:1654517-1665694[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.14 13 7.1 0.0 2 23 248 270 247 270 0.92 2 17 0.21 20 6.5 0.4 2 23 296 318 295 318 0.94 3 17 0.0044 0.41 11.8 3.2 1 23 340 362 340 362 0.98 4 17 0.00033 0.031 15.4 1.4 1 23 366 389 366 389 0.98 5 17 0.013 1.2 10.3 0.2 2 22 395 415 394 415 0.94 6 17 0.21 20 6.5 4.5 1 23 422 445 422 445 0.97 7 17 0.058 5.4 8.3 0.7 2 23 453 475 452 475 0.93 8 17 0.11 10 7.4 5.8 2 23 481 502 480 502 0.97 9 17 0.88 82 4.6 0.6 2 23 573 595 572 595 0.93 10 17 3.3 3.1e+02 2.8 0.8 2 20 668 686 667 689 0.92 11 17 1.6e-07 1.5e-05 25.8 0.6 1 23 693 716 693 716 0.97 12 17 4 3.7e+02 2.5 0.4 3 20 722 739 721 741 0.91 13 17 0.012 1.2 10.4 0.4 2 23 749 771 748 771 0.89 14 17 0.00018 0.017 16.2 0.7 1 23 778 801 778 801 0.91 15 17 0.003 0.28 12.4 0.4 1 23 806 828 806 828 0.94 16 17 5e-05 0.0047 17.9 0.5 1 19 834 852 834 856 0.95 17 17 0.00016 0.015 16.3 2.3 1 23 862 885 862 885 0.97
Sequence Information
- Coding Sequence
- ATGGCAGCAAAGACGACAGAATGGCGACCCGGGCCTACGGTTTGCCGATGTTGTCTCACTGAGGGCTGCTACAAAGACATTTCTACTGAATATTTTTGGATGGGAAAAAGAGAAGTTTATGCAGATATGTTGTCTGAAACTTTTGATTTAAGTATATCATATTCACAATCTGGTGGGCCGAGCAGCCACAGTCGTCTCATTTGTGAACCTTGCATATCAAGATTACGAGATGCTGCTGATTTCAAGCGGCAAGTTCAAGAGTGTGAACGCACATTCACACAGTACTTGGATCCGGGGAACTCTACTAATGATATAGATGTGAGCGTGATAGCGGATAGACCAGATACGGATATTAAAGTGGAGTGCGTGAAAGAAGAAAAGGGAGACTCTGAAGACGATGACTTCGACGACCGGCCCGACTTTGGTGACGACGATGATTATGACGACCTTGACGACGAACCTCTAACAAAGTTAGCCAGTAAAATACCCAAAAAGGAATCCGTTGAAATATTAGATGTGATAAATAACGAAAAAGTAACGGAAAAACGGAAATCGTCGTCGAAAACGAAGTCCTCGTCCGCGAAAAAGGTTAAGACGAAAAAGGAAATAGCCACGTCGAGTAAGGAAAAGCCCGAGCCGAGGAAGAAGAAAGACGAATGTTCGGACCCGGCTCGCGGTAACGCCGCAACAATAATAAAATGTACGACCGCGTACCCCTTCAGAGTGAACGATAAATGCATAGTGTGCGTTTACTGCCAGGAATTGTACGACGATCCTGACGTATTCAGACGGCACATGGATGAGGAACACAATTCATTCAACATTAGAGTGGCGTTCCACAACTTGCCCAAACTAGAGTTTATTAAAGCCGATTTGACCGACTTGAAATGTAGGATATGTTCCCAACAGTTTGACAGTTTGGAAACTATAGCGGAACACCTAAAACAGACGCATAACGAGGCTATCGATTCTAACGCCCGACTCGGTGTGATGCCATACGTTTTGCGCAAGGATTTCTTCAGTTGCGTGGTCTGTGCTAAGAGTTGCCCATCACTATTCCATTTGAACAGGCACACGATAACGCACTTCCTAAGTTACGTGTGTCATTTCTGTGGCAAAAGTTATGTGGCCACGACTGGCCTGTTACGCCACGTCCGATCCAAACACCAAGAGTACAAAGTGTCGTGCAGAAGATGCGGGAAGGTCTTCCCGAATATGGAAGCAAAGGAAAAGCACAGAAGGACAGAGAAATCCTGCATGGCATACTGCTGTTCCAAATGCCCGGAGAGATTCCACGACTGGAAGATTAGGAAGAGGCATATGGAGACTGAACATGGCCAAACGAAACGTATAGACCGTTGTGCCGATTGCAACATAACGTTTAGCAAAGGCAGTGCCTATTACCAACATTTCAAACTAAAACACTCCAAAGACTGTGTGGTCTGCAAACATTGTGGCATGAAATTTATTTGTCGATCTCGTTATAAACGACACTTGTCCACTCATACAACCAGGTTGCCTAATGAAGTTTTCTTTCAACGTAAGACAAGTGGTAATCATGCAGCACATGTAAATTATCAGAGCTCGCTTACTGTACTGTGTACTGTACACTGCCAAAATATGAAGGTGGATTGGTTAGTCGCGGCGCGTCTCAACGCTAAGGTAGTTTTGAAATATTCAACGGCGTATCCTTTCAGGATACCGAGTAATTCCATGGTTTGCGTCTACTGTTGCGAGCAGTATGACGATCCGAAGCTGTACAGGCAACATATGAACGAGGAACACTCGGATTTCAATGTGGAGACCGCTTTCGCACACTCCATGAATAACTATACGGAATATCTGAAAGTTGACTGCTTTGATCTAACTTGTCGCATCTGTATGGAACCCTGTGAGAGTATAGTAGCTATTGCCCAACATTTAGTCAGTGAGCACAAAAAGAATATCAATCTCAATATAGAAGTGGGCATGCAAATGTTCAAATTGGGTCAGGAAAGATGGGTTTGTGCGCTGTGTAACCTGAAACTTCCAAGTCTTCGCGAATTGAGCAGACATACCAGCTGCCATTACCATAAATATACGTGTGAGACATGCGGCAAGTCGTATATAAACAAAGAAAATCTGACACGTCATATACAATATGGTCACAGTGAATATAAAATTTGCCTGAAATGTAAGGCCGCCTTTCCAAGTTGCGAAGAACGACGTCAACACGTTCTATCCTCAGAAAAATGTTGGCCCCAAAGTTGCAATTTGTGCGGAAAGAGATTTATATCACGGAAGATGAGACTGGACCATCTGATCGAAGCTCACGGTCAAAGACCCAAGAAATACACTTGCCCAGATTGTGGGAAAGAGTTTGATAAGTGGCATCCATATAGAGCGCATTTCATACTCTCCCACACAGATGATATATTTGCTTGTTCGTTCTGTGGTTTCAAATTTGACACTAAACGAGCTTTGGCTGAACATAAAGTAATTCATACTAAAGAAAAATCATTTCCTTGCACGGTGTGCTCCAAATCGTTTGCGAGAAAGAAAAATTTAATTCAACACAGCTGGATACACAGCGAGTTCAAAAGATTCGAATGCACTCTTTGCAGTAAGCAGTTCAACCAGCGAGTCAGTTGGAAGACACATATGAAGTCTTATCATCCAGAATTAGTAGACTTTTGA
- Protein Sequence
- MAAKTTEWRPGPTVCRCCLTEGCYKDISTEYFWMGKREVYADMLSETFDLSISYSQSGGPSSHSRLICEPCISRLRDAADFKRQVQECERTFTQYLDPGNSTNDIDVSVIADRPDTDIKVECVKEEKGDSEDDDFDDRPDFGDDDDYDDLDDEPLTKLASKIPKKESVEILDVINNEKVTEKRKSSSKTKSSSAKKVKTKKEIATSSKEKPEPRKKKDECSDPARGNAATIIKCTTAYPFRVNDKCIVCVYCQELYDDPDVFRRHMDEEHNSFNIRVAFHNLPKLEFIKADLTDLKCRICSQQFDSLETIAEHLKQTHNEAIDSNARLGVMPYVLRKDFFSCVVCAKSCPSLFHLNRHTITHFLSYVCHFCGKSYVATTGLLRHVRSKHQEYKVSCRRCGKVFPNMEAKEKHRRTEKSCMAYCCSKCPERFHDWKIRKRHMETEHGQTKRIDRCADCNITFSKGSAYYQHFKLKHSKDCVVCKHCGMKFICRSRYKRHLSTHTTRLPNEVFFQRKTSGNHAAHVNYQSSLTVLCTVHCQNMKVDWLVAARLNAKVVLKYSTAYPFRIPSNSMVCVYCCEQYDDPKLYRQHMNEEHSDFNVETAFAHSMNNYTEYLKVDCFDLTCRICMEPCESIVAIAQHLVSEHKKNINLNIEVGMQMFKLGQERWVCALCNLKLPSLRELSRHTSCHYHKYTCETCGKSYINKENLTRHIQYGHSEYKICLKCKAAFPSCEERRQHVLSSEKCWPQSCNLCGKRFISRKMRLDHLIEAHGQRPKKYTCPDCGKEFDKWHPYRAHFILSHTDDIFACSFCGFKFDTKRALAEHKVIHTKEKSFPCTVCSKSFARKKNLIQHSWIHSEFKRFECTLCSKQFNQRVSWKTHMKSYHPELVDF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -