Bsel022849.1
Basic Information
- Insect
- Boloria selene
- Gene Symbol
- -
- Assembly
- GCA_905231865.2
- Location
- HG993159.1:1690802-1693134[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.045 4.2 8.6 0.5 1 23 5 27 5 27 0.96 2 17 0.0013 0.12 13.5 0.6 2 23 55 77 54 77 0.96 3 17 4.6e-05 0.0043 18.1 4.2 1 23 100 122 100 122 0.98 4 17 0.033 3 9.1 0.1 2 23 127 148 126 148 0.96 5 17 3.1e-05 0.0029 18.6 0.5 3 23 155 176 153 176 0.95 6 17 0.0099 0.93 10.7 3.7 2 23 186 208 185 208 0.96 7 17 0.52 48 5.3 2.8 1 23 214 237 214 237 0.92 8 17 0.0089 0.83 10.9 5.2 1 23 241 263 241 263 0.98 9 17 0.089 8.3 7.7 0.1 2 23 366 388 365 388 0.93 10 17 0.001 0.094 13.8 5.9 1 23 411 433 411 433 0.97 11 17 0.15 14 7.0 1.7 2 23 438 459 438 460 0.93 12 17 0.0013 0.12 13.5 1.1 1 23 464 487 464 487 0.92 13 17 2.1 1.9e+02 3.4 6.4 2 23 497 519 497 519 0.96 14 17 0.0036 0.34 12.1 1.9 1 23 525 548 525 548 0.94 15 17 1.7e-06 0.00016 22.6 1.4 2 23 553 574 552 574 0.96 16 17 0.00014 0.013 16.5 7.1 1 23 580 602 580 602 0.98 17 17 0.013 1.2 10.4 1.0 1 23 608 631 608 631 0.93
Sequence Information
- Coding Sequence
- ATGGGCTCGAGCTTTAAATGCTTTTACTGTCTCCAGTATTATTCGGATTTGGCTGATCTATTGGAACACACTTCTGCACATGATGTCTCTAACAGAGATGTTGTTTTAAAAAAATATGTACACAAAGGAAAGCGTACACTGCAAGTGGATATATCACAGTTAAAATGCCGGTTATGTAATAAAAACTTTCCAAACTTAGACACAATTCGTGAACATTTGAAAATGGAACATATTAAACATTTTTTTTCAGCCAGTAACGGAATGACAGAATATAATATGGAGGTTAAAAATGGCTGTTTCGTTTGCCACGTCTGTAATGAAGAATTTAATTCCTTCACTCATTTGAATTCACATATGAATAGTCATGTGGGCAAAGTCGTGTGTGAGAGCTGTGGTGCGGGATTCTTGAACAAGTATTTTCTAATAAAGCATAGAGAAACTCATTTAACTACAACCATAAATTGCAAGTTGTGCGAAAAAGTTTTCACCAAAAAAGGTCAGTTGAGATACCATATTGCGAAGGTGCATAAAGAAATAGAGAGAGTTAAACTACAAAAGTGCACTCTTTGCAACGAAACATTTAAAGAGCATTATAGTAAAATGGTTCACATGAGAAATACCCATGGAGTTTCTAGAACGTTTGCCTGTTACATATGCAAACATATCTTTCAAACAAGACGAGCTGTAACTCAACACACAACGCAGAAGCACACAGAAAAGTTCAAATGTGAAATATGCTGTAAATGTTTTAGCATCGAATCAAGATTAAAGCAGCACATTCGAGGGCACACTGGGGAAAAAATGTTCACGTGCCCAATATTAACTTCTAGAGAACTTCCGATGACTAGCAAATGGTCCATGACGTTAGCTGAAAGGAAAAACGCTGCAACCCTCCTACAATATACTACAGTTACCCCGTTTACTTACCTTCTCTTCCCAAGCTCCTACAAATATCTTTATTGCGAAGAAAAAAAATTAGAAATTCAAATCTTGCTAGAACATTCTAGAAGTCATGATATACCAAATTACAATTATATTTTAAAGAATATCCTGAAAAAGGGTAAAAAGAAGATTAAAGTGGACATCTCAGATTTGAAATGTAGAATATGTGAAACGCCATTCTCAATTTTGGAAGATGCTCAAAAACATTTAATGGATGTACATAAAAAGGATTTCACAAAAGCTGGAAATGGCATGATCGCTTTTAATTTGAAAGTCAAGAACAATGATTTCAATTGTCACATTTGCTCCAAGACATTCCATAGTTTCTTTCTTCTGAACAAGCATATCAGCATTCACTACAGGAATGCTGTGTGCGAAACCTGTGGCAAAGGCTTTCTTTCTTACCAAAGACTGTTAACTCACACGCAGAGTCATCATACCGGCACATATCCATGTGGAAAATGTAAGAAAATATTTCCTAGTACGTCAAAACTAAAATACCATAGTGATAAAGTCCATGGAAAATTGGGGCAAGTTAAACTGGCCAAGTGTCACAAATGCTTGGTGCGATTTGAACACCACTACGAGAAGATCAAGCATTTAAGAGATATACATGGTGTTGTATTTACGTTTAAATGTGAAACCTGCGAATTAAGTTTCCAAAGTAGGCATGCTTTGAATATGCATGTGGTAAAATACCATGCCCAAAACATTGTTTGTGATATTTGCAAGAAAACATTTTCAGGGCGCTACCACTTAAAAAAACATATGGTGATACACTCGCAGGAAAGAAATTTTGTCTGTCCGTTGTGCAAAAAATGTTACAGATATGAAAAAACATTGAAACATCATCTAAAGACGCACAATCCTGAGTGGAAATTCTCGTGTTCGATATGCTGGAGTGGTTTTTCTGATAAATTTGATTATAAAAGTCATAAGGTGTCCATGCATTAA
- Protein Sequence
- MGSSFKCFYCLQYYSDLADLLEHTSAHDVSNRDVVLKKYVHKGKRTLQVDISQLKCRLCNKNFPNLDTIREHLKMEHIKHFFSASNGMTEYNMEVKNGCFVCHVCNEEFNSFTHLNSHMNSHVGKVVCESCGAGFLNKYFLIKHRETHLTTTINCKLCEKVFTKKGQLRYHIAKVHKEIERVKLQKCTLCNETFKEHYSKMVHMRNTHGVSRTFACYICKHIFQTRRAVTQHTTQKHTEKFKCEICCKCFSIESRLKQHIRGHTGEKMFTCPILTSRELPMTSKWSMTLAERKNAATLLQYTTVTPFTYLLFPSSYKYLYCEEKKLEIQILLEHSRSHDIPNYNYILKNILKKGKKKIKVDISDLKCRICETPFSILEDAQKHLMDVHKKDFTKAGNGMIAFNLKVKNNDFNCHICSKTFHSFFLLNKHISIHYRNAVCETCGKGFLSYQRLLTHTQSHHTGTYPCGKCKKIFPSTSKLKYHSDKVHGKLGQVKLAKCHKCLVRFEHHYEKIKHLRDIHGVVFTFKCETCELSFQSRHALNMHVVKYHAQNIVCDICKKTFSGRYHLKKHMVIHSQERNFVCPLCKKCYRYEKTLKHHLKTHNPEWKFSCSICWSGFSDKFDYKSHKVSMH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00247427;
- 90% Identity
- -
- 80% Identity
- -