Bsel020010.1
Basic Information
- Insect
- Boloria selene
- Gene Symbol
- -
- Assembly
- GCA_905231865.2
- Location
- HG993145.1:3536827-3539628[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.2e-05 0.0011 19.9 2.4 1 23 210 232 210 232 0.97 2 11 7e-05 0.0066 17.5 0.9 1 23 238 261 238 261 0.96 3 11 0.00028 0.026 15.6 0.1 1 23 268 290 268 290 0.98 4 11 0.002 0.19 12.9 5.2 1 23 297 320 297 320 0.97 5 11 0.0019 0.17 13.0 1.0 1 23 326 348 326 348 0.97 6 11 0.012 1.2 10.4 3.3 1 23 354 377 354 377 0.95 7 11 0.01 0.97 10.6 2.4 2 23 383 402 382 402 0.97 8 11 4.3e-07 4.1e-05 24.4 4.9 1 23 408 430 408 430 0.98 9 11 7.9e-06 0.00074 20.5 1.4 1 23 436 458 436 458 0.98 10 11 4e-05 0.0037 18.2 0.5 1 23 464 487 464 487 0.98 11 11 0.00081 0.076 14.1 2.4 1 21 493 513 493 514 0.94
Sequence Information
- Coding Sequence
- ATGGCTAATGTAAAGAATAAGATTAAGTCGCACAAATCATCATCTAAAACTAAAAAGACTACTAAAACTGATTATCTCAAAACATTATTAATAGGTTTTGACAATGACAAGATTACAGAGTTGGTTATGAGCGATGAAAAAACTCCCCAACCAGACGACTCAACAGAACCTGCCGACCCTAAGTTAATAAAAGACAAAGAAAGTGATACAGTGCTTGTAAAGGATTCAGTATTAAAAAGAGAAATTAAACTCACAAGGGATAGACTATTGACAAAGCAAGGATATCTCAAGCATAAAAACAGAGACAATTTAAAGTTATGCAATGATATATTGAAAAATGAATTGTTGATTTCTGACAATAAAAAAAACAACACAAATAACAATAATTCAGTTACAAGTGACCAAAATAAAAGTAAAACTGAGAAAGAAAGTCAAATTAATGATAAAGATAAAAGAAAAAAAATAAGGGAAAGTGAAAAAGGTGATCAAAGTAACAGCTCATCACCAACTAAAAGAAAGTCTGATGATGATGGTTCAAAAAATAAACACAGTAAATCAAAGAAGAAAAAAGATGATTTTGTGGATCTTCCCCCAGTTAAGAGGAGAAAAACAGTAAAGAAAGGACTTTTTATTTGTGATTATTGTGATAAAAGCTTTGCCACTAGATGCAATATTAGGCGCCATATATACATACATTTAGCTAACAAGACTTATCCTTGTAGTCAATGTAATAAAGTTTTCAGCAAAACATTATATTTGCAAGCTCACATCACAAGACAACATCCTAACTGGGAACAACACTATATGTGCAATATATGTAATAAACCATTTCTTCTGAAAGAAAATTTACTTGTACACATGGCTTCTCACAATTATTCTGACATGAAATTCAAATGCTTTTATTGTAGAGAAAAATTTACTCAACAACATAAACTAATTGAACATGAACAGAAGCAGCATTTGGTTGATGGACGGTATGATTGTGTAGTTTGTGATCAGAGCTTTGACTCTAGGAATAAGTTATCCTTGCATTTCAAGTCACATTTAAAAGTAAAAGATCATGTTTGTCAACATTGTGGAAAAGAATTTTTACGAATGAATTCTATGAGAAGACATGTGCAGGTATCCCATGCTGGTCTAAGAATTCAGTGCAAAATATGTAAAAAGGTACTAAAAGGACATCTATCGGAGCACATGCGCACTCACGAAAAATACCGTCCTCACAAATGCCCAGACTGTGGACAATGCTTCACTCAATCTACTCAACTGACGGTACACAGGAGATCCCATTCTGGAGCAAGGCCATACCCTTGCCGAATATGCAAAAGGCCATTCACTCACTCTAATGCTCTAATGTTACATATTCGTCGACACACTGGTGAGAAACCCTTTAAATGTGCCATGTGCCCCTTAGCATTTTCACAATTGCCCCATATGAAAGCTCATATGAAGAGCATACATGGTAAAGAAGACCCTTACAGATGTAAAAAATGTAAGACTTTTTTCAAATTAAAGAGTGAACTCGAAAGTCATGCAAAAAAATGTAACAAGGAGTCGTCACTTCAGCAATTAGCTCAATTTGAAGAAGACGAGGAGGGCCCCATGAGCTTAAGCCGTATGAGATACCTATTGGCACTACTTCTCACTATGATTGCTACTAAAGAAAAACTCAAATATTTAGGTTTCAACAAACGTTTAATAGACGACTTGCTTGTGGAGTCACTTGAAGCCATGGGTCATGTCCCTTGTAAAAATAAATCCCTGACTTCCAAAAAACGACTGAAGACAAATATTGCAATACTGTTAAATGGGACAGTACCAAAGGAAAAGATGGATAAATTCCGAAAAGAAAGCAAGAGCACAGAAGATATATTAGAGCTTCTGACTGACGAGAAAAAATAA
- Protein Sequence
- MANVKNKIKSHKSSSKTKKTTKTDYLKTLLIGFDNDKITELVMSDEKTPQPDDSTEPADPKLIKDKESDTVLVKDSVLKREIKLTRDRLLTKQGYLKHKNRDNLKLCNDILKNELLISDNKKNNTNNNNSVTSDQNKSKTEKESQINDKDKRKKIRESEKGDQSNSSSPTKRKSDDDGSKNKHSKSKKKKDDFVDLPPVKRRKTVKKGLFICDYCDKSFATRCNIRRHIYIHLANKTYPCSQCNKVFSKTLYLQAHITRQHPNWEQHYMCNICNKPFLLKENLLVHMASHNYSDMKFKCFYCREKFTQQHKLIEHEQKQHLVDGRYDCVVCDQSFDSRNKLSLHFKSHLKVKDHVCQHCGKEFLRMNSMRRHVQVSHAGLRIQCKICKKVLKGHLSEHMRTHEKYRPHKCPDCGQCFTQSTQLTVHRRSHSGARPYPCRICKRPFTHSNALMLHIRRHTGEKPFKCAMCPLAFSQLPHMKAHMKSIHGKEDPYRCKKCKTFFKLKSELESHAKKCNKESSLQQLAQFEEDEEGPMSLSRMRYLLALLLTMIATKEKLKYLGFNKRLIDDLLVESLEAMGHVPCKNKSLTSKKRLKTNIAILLNGTVPKEKMDKFRKESKSTEDILELLTDEKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00212830;
- 90% Identity
- -
- 80% Identity
- -