Basic Information

Insect: Boloria selene
Gene Symbol: -
Assembly: GCA_905231865.2
Location: HG993159.1:1467557-1469383[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0032 0.3 12.3 1.7 1 23 33 55 33 55 0.96

2 16 0.27 25 6.2 0.0 2 23 84 106 83 106 0.94

3 16 0.045 4.2 8.6 0.3 2 23 127 149 126 149 0.93

4 16 0.00037 0.035 15.2 2.1 2 23 155 177 154 177 0.95

5 16 0.0024 0.22 12.7 1.0 1 23 182 205 182 205 0.92

6 16 0.11 10 7.4 0.1 2 23 208 230 207 230 0.95

7 16 0.0039 0.36 12.0 1.5 2 22 237 257 236 257 0.94

8 16 0.0019 0.18 13.0 0.6 1 23 315 338 315 338 0.93

9 16 1.2 1.2e+02 4.1 0.1 3 23 367 388 365 388 0.91

10 16 0.056 5.3 8.3 0.3 3 23 412 434 410 434 0.95

11 16 0.00034 0.032 15.3 0.6 3 20 441 458 439 462 0.90

12 16 0.0054 0.5 11.6 0.4 1 23 467 490 467 490 0.97

13 16 0.00023 0.021 15.9 0.2 2 23 496 518 496 518 0.94

14 16 2.5e-05 0.0023 18.9 4.7 1 23 522 545 522 545 0.97

15 16 0.00011 0.01 16.9 0.6 2 23 552 573 551 573 0.96

16 16 0.00073 0.068 14.3 2.1 1 23 579 601 579 601 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0032	0.3	12.3	1.7	1	23	33	55	33	55	0.96
2	16	0.27	25	6.2	0.0	2	23	84	106	83	106	0.94
3	16	0.045	4.2	8.6	0.3	2	23	127	149	126	149	0.93
4	16	0.00037	0.035	15.2	2.1	2	23	155	177	154	177	0.95
5	16	0.0024	0.22	12.7	1.0	1	23	182	205	182	205	0.92
6	16	0.11	10	7.4	0.1	2	23	208	230	207	230	0.95
7	16	0.0039	0.36	12.0	1.5	2	22	237	257	236	257	0.94
8	16	0.0019	0.18	13.0	0.6	1	23	315	338	315	338	0.93
9	16	1.2	1.2e+02	4.1	0.1	3	23	367	388	365	388	0.91
10	16	0.056	5.3	8.3	0.3	3	23	412	434	410	434	0.95
11	16	0.00034	0.032	15.3	0.6	3	20	441	458	439	462	0.90
12	16	0.0054	0.5	11.6	0.4	1	23	467	490	467	490	0.97
13	16	0.00023	0.021	15.9	0.2	2	23	496	518	496	518	0.94
14	16	2.5e-05	0.0023	18.9	4.7	1	23	522	545	522	545	0.97
15	16	0.00011	0.01	16.9	0.6	2	23	552	573	551	573	0.96
16	16	0.00073	0.068	14.3	2.1	1	23	579	601	579	601	0.97

Sequence Information

Coding Sequence: ATGAAAGGCTGTGAGTCGTCCTCGATGCGTAGAAGGAAAAACCTTCAACTAATCTTCAATAACACGTCAGTCATACCGTTTAAATGGCGAGGAAAATATCTATGTTTTTATTGTAGCAAAGATGTATCTGAATATTCCGAACTTAGAAAACATACCAAGTCTCATGGGAATTGTTCAACCAAAGACCATTCCTTAAAAGTCTTGAAAGGTGGACAGAATATGGAAATCAAAATTGATGTTTCAGAAATTAGTTGTGAGATTTGTAGCGAAGACTTTCCCGTTTTTGATGATGTTTTAACACATTTACTGGTTAAGCATAAGTTGGAGTTCGATAGGGAAGTAGATATGGCCATAGAAGAATACCGCTTAGTAGATCTAAGTTGCCTTTTGTGCGAGGAAAAGTTTAGCTACTTTGGTTATTTAGTGTCGCACGTAAATAATAATCATCCAAAGAATTGTTTGATTTGCGACAAATGTAATCAGAAATTTAATAAGAAACGTGATCTTTTTTCGCACATCAAAAATTATCATCGAGAAGGCGGCTATCAATGCGATGTATGCCCTCAAAGCTTTAGTTCTCTGAATATATTAAGAAAACATAAGACCAATCGCCATTTAACTAGATGTAATATATGTCAGTTAAGACTGCCTTCTGCGGTTCTTAAGCAAAAACATATGGAAATCGAGCATCCAGATGATGGATCTCTCCAATGCGAAATTTGCTATAAAGATTTTCATACTAAACAAGGTCTAAAAATGCACACGCGTAAATGTAAGGGCGATTTATTCGATATAGCTATTAAAAAGGAAGAATTTGAAGTTATGGACTTAGATAGCAACTACGAGAGCGTTAAACGACCAAGTGTGAAACAGATTAGGGAAAATATTGTCATAGTAATAAATATGTCTACCGCGATACCGTTTAATTTTTACAAAAATAAATTTAATTGTTTCTACTGCTCCAAAGATTTCCCAGACTCTGATTCGATGAGAGAGCACACAGTAATGGAGCACCCTGTGTGCAATGTCAAAGAGAAATGCATCAGAAAGTGCCGAGAATCGGTCGCATGTGTGAAAATCGATATTTCGTCCCTAGCTTGTAAAATTTGCTTCGAAACGATGAACGGTCTCGATAACCTTTTAGATCATCTTATCTTAAAACACAATGCGAATTACGATAAATCGATTACTACATGTCTACAACCCTACAAGCTAATTAAAGACAATATGGCGTGTCCGAACTGTCCCAGTGAAGTATTTCGATTTTTTGGCACTTTATTAAAACATATGAATAATAAGCACACAAATAATAATATAATTTGCGTCTATTGTGGTCAAACCTTTAGACGTGATCAGAACCTACGTGTCCATATCTGGAGACACCATAGAGATGGTAGATTCAAATGTAACATTTGCGGTGCAGAATGTAATATACCATCGAGATTGTATATGCATATGGCGAAAGCTCATGGTGTCAAAGCGGCCAAATGTCCAAAATGTCCAGAAAGCTTCGCCACACAGTATCTAAGACAAAAGCATCTAATAGAAGCGCACGATTCAGGTCATAAATGCTCATACTGCGGGAAGCTGTTCACTAGAAATTCCTTTATGCGAGATCACATAAGACGTACGCATTTGAAGGAAAAAAACGTTGAATGCTCCATTTGTAATATGAAGTTCTTCAATAATATTCTCCTGAGGAGACACATGGTGAAGCACAGTGGGGAGAAAAATTTTCACTGTGACATATGTGGTGAAAGGTTTTATTGGAGGAAAAGTTTGCGAACACATATGGCTAGGCATAATAAGCTAATAGCTGCTATTTAG
Protein Sequence: MKGCESSSMRRRKNLQLIFNNTSVIPFKWRGKYLCFYCSKDVSEYSELRKHTKSHGNCSTKDHSLKVLKGGQNMEIKIDVSEISCEICSEDFPVFDDVLTHLLVKHKLEFDREVDMAIEEYRLVDLSCLLCEEKFSYFGYLVSHVNNNHPKNCLICDKCNQKFNKKRDLFSHIKNYHREGGYQCDVCPQSFSSLNILRKHKTNRHLTRCNICQLRLPSAVLKQKHMEIEHPDDGSLQCEICYKDFHTKQGLKMHTRKCKGDLFDIAIKKEEFEVMDLDSNYESVKRPSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFPDSDSMREHTVMEHPVCNVKEKCIRKCRESVACVKIDISSLACKICFETMNGLDNLLDHLILKHNANYDKSITTCLQPYKLIKDNMACPNCPSEVFRFFGTLLKHMNNKHTNNNIICVYCGQTFRRDQNLRVHIWRHHRDGRFKCNICGAECNIPSRLYMHMAKAHGVKAAKCPKCPESFATQYLRQKHLIEAHDSGHKCSYCGKLFTRNSFMRDHIRRTHLKEKNVECSICNMKFFNNILLRRHMVKHSGEKNFHCDICGERFYWRKSLRTHMARHNKLIAAI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01198043;
90% Identity: iTF_00897141;
80% Identity: -