Bsel023628.1
Basic Information
- Insect
- Boloria selene
- Gene Symbol
- -
- Assembly
- GCA_905231865.2
- Location
- HG993159.1:7638350-7643188[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 6.3 5.9e+02 1.9 0.4 2 17 73 88 73 89 0.81 2 28 2.6e-05 0.0024 18.9 0.8 1 21 162 182 162 183 0.96 3 28 1.5 1.4e+02 3.9 5.0 1 23 216 239 216 239 0.96 4 28 0.0087 0.81 10.9 2.8 2 23 245 266 244 266 0.96 5 28 0.032 3 9.1 2.3 2 21 270 289 269 290 0.93 6 28 0.0097 0.9 10.7 0.8 2 23 338 360 337 360 0.95 7 28 0.025 2.4 9.4 0.6 1 23 393 415 393 415 0.98 8 28 0.0025 0.23 12.6 1.5 1 23 421 444 421 444 0.97 9 28 0.0061 0.57 11.4 1.2 2 23 454 476 453 476 0.96 10 28 3.3 3.1e+02 2.8 1.4 1 13 486 498 486 501 0.87 11 28 0.00034 0.032 15.3 0.2 2 20 624 642 623 644 0.94 12 28 0.074 6.9 8.0 0.1 3 23 650 670 649 670 0.95 13 28 0.0002 0.019 16.0 0.9 3 23 677 698 676 698 0.96 14 28 4.8e-05 0.0045 18.0 0.6 2 23 704 725 703 725 0.97 15 28 0.00073 0.068 14.3 1.4 1 23 761 784 761 784 0.93 16 28 0.084 7.9 7.8 3.4 1 23 790 812 790 812 0.95 17 28 2.2 2e+02 3.4 0.3 1 23 846 869 846 869 0.87 18 28 0.0033 0.31 12.2 0.8 3 23 876 897 875 897 0.91 19 28 0.0037 0.35 12.1 1.2 2 21 1007 1026 1006 1027 0.94 20 28 4.3 4.1e+02 2.4 0.2 3 23 1034 1055 1033 1055 0.95 21 28 0.24 22 6.4 3.5 1 23 1060 1083 1060 1083 0.94 22 28 0.0001 0.0098 16.9 0.3 2 23 1089 1110 1088 1110 0.97 23 28 1 94 4.4 1.3 2 21 1114 1133 1114 1134 0.91 24 28 2.2e-05 0.002 19.1 1.4 1 23 1160 1183 1160 1183 0.95 25 28 0.0017 0.16 13.1 0.8 1 23 1189 1211 1189 1211 0.92 26 28 0.1 9.6 7.5 0.1 1 23 1217 1239 1217 1239 0.97 27 28 0.0015 0.14 13.3 0.4 1 23 1245 1268 1245 1268 0.94 28 28 5.9e-05 0.0056 17.7 0.6 2 23 1275 1297 1274 1297 0.95
Sequence Information
- Coding Sequence
- ATGACACGACAAGTCGACATAAAGGCTCTTGTATCGCATGTAGTTCGTGGAGACGGTGTAAATAAGTGTCGAATATGTATGGGAGATACTTCTGAAGGACAAGTCTATTTAAACGATACCGTTATGATGGATGGCGATAAACCTATAACCCTATCCGAATTGCTGGAAACCATAACTGGCATCCAGGTGAAGGAAGAAGGGGACTTACCTGACGGAGTGTGCCCAAAATGTTCCAAATGTGCTATAAATGCTGCTGAGTTCAGAACCTTATGTCAACAAGCAGCTAATCAGTGGGATATAACAATTACTCTGCTGCATGACCTCCCAACTCGATGCCTAGATAACAAAACAATATTCGCTATTTTAGAGAAAACACAAATGATTGTTATTAATGATAAAAAGAAGTCATACAATACCACAACAGCTGCTCAAAGGCTAACAACTCATCTAATCAAAACTGCAGTAGACAAAGAGGACGGCCATTTTAAGTGTCCAGATTGTAAAAAGGAGTTTACAAATGCATTTCAACTGTATCAACACTTAAAAGAATCTCCTGAATTAAAACGAGCCTGTTATATATGTGGCACAATTATGTCTCATAATGATATACTGTGTCACATGATAAATGAGCACAAGGAAGTTCCGTATAGTTGTAAAAAGTGTACAGCTCTATTCTGCTCTTATAACAAATATTTGAAGCATTTAACAAAAGCGCATTCAAAAGGTGTGACTACTTGTATGGAATGTGGACGTACCTTTCAAACACACAATGCATTTCATGCTCATGTCAATGTACATGTTCTTAAAACTTGCCCAGGATGCAATAAACTATTTCGAAATCACTCTTGCTACATATATCATGTCAAAGTATGCTGTAATTTGGTTCACACTAAGCAAATAACTCCAAGCAAAATTCTAAAACCAAAAAAAAAAGTTATTGTCACAGTGAAAAATAAAATTAGCAATCGCAAAGTAAAAGTGGGTCCTCGTGGAGCGGCAAACACAGAGTGTATATGCGATTATTGTAAGAAAAAATTTGCTGGCAAGAAGTTTGTCGCTGCACACATTCAAATAGTACACATGAGAAATACTCACCGTCCATGTATTTATTGTGGGAAGCTGCTGGCATCAGCACATATGTCGGAACATGTCAAAACACATGAATCTAAGAAAACTTATAAATGTTCACAATGTGAAGTGGTTTTAAACACAAAATTAGGTTACAATCAACATTTGCGTCTTCATACTGGTGAAAGGCCATACACTTGCAAGTTTTGTGGCCAAACGTTTTCAGCTTCATCAAGACGTTCAGAGCATATTCGAAAAGTACATAAAAGCCAAGATATAGTTTTAAAACAGGAGTGCCACTTGTGCCCAGCGAAATTTAGACTTCCCTATAGATTAAAGCAGCATCTGAAATCAGTTCATAATGATGATCAAGATACTTTACCTAAGTTTGAATGTGATACCTGTCATGAGAAGTTCGCTGTAAAATACAAGAAAATACAAGAAGAGATGAAGGCTGATTGGTCCGCGTGGTTTCAGGTGGTGGAAGAAACCGACCTCCCCGCTGGGTTGTGCTGCGCCTGCACAGATAATGCCATTTCAACGTGGCAGTTCAGGCATTTATGTCGTGAGTCGCACAGACAGTGGACACAGATTTCCACACTCCTGATGAGAACAGACGTACCCACCACGAAAGATAAGACCTTCTTCATCAGCACCAATGGCACCCTACTAAGAGACCACATGAATAACATCCACACTTTGACAGACGCTACCAAAAGATTGAATTTTTTAACCGGAAACGCGAATAAAGTGCGCGCGAAATACAAAAAGAAACAATCGAAAGCAGCTGTGAGTAAATCCAAGTGTAAAGATTGTGGAAAAGAATTTGCATTGCCATATTTTTTAAATCGTCATTTGATAAATACGCTGAAACGCGCTTGTACGTTATGTGGTAAGGTTGTGTCTCGGGAAAAGCTGGCGATACATTTACAAAGGGTGCATCGAAGGTTTGTGGAATTTTGCAACATCTGCTACAAAGTTTTTGATGACAAAAATCATTTGGATCGTCACATAGAAATTTTACATGGGGACAGCTCTTTACAATGCAATATATGTAAACTCGGCTTTAAAAGTGAGAGATCTTTAAACGCCCACATGTACACACATACTTTATTCAACTGCTCCTCGTGCAACAGTTGCTTTGAAAATCAAAAATGCTATTTATACCACAGAAACAACTGTAAAGGTTCTAAGTGTACAAAACAAGATGTTTATGAGTGTCACGACTGCGGCAGTAAATATACAAAGAAGCCGTCCCTCAGAGTCCACATAGTTCAAAAGCATTTGAACGTGTTGCCATATATCTGCCAAATTTGTGGGAAACGCAGCTCTTCGAAAACCCACCACCAATCCCACGAATTAGTTCATAAAAAAGAAAGGAAGGTATACCAATGCTACTGTGGTGCAAAGATGAGAACAGTTCTTGGTTTTCATATGCACCAAAGGATACATTCAGGAGAAAAGCCATATGAATGTGAGGAGTGTGGTGATAGATTTCTATCTGCTTCTAGAAGATTGGATCACATTAAAAGAAGGCATAGAAGTAAATACCACGGTTGTCTTGAGTGTGACGCGAGGTTTGTTAGGCCATCGGAATTGAAAAAACATTGTCGTTTAGCGCACTTTGTACAAGAAGACCAATTATTTCCGAGAGGCCTGTGTATATCCTGCACAAGTGTGGCTGTGTCTGCTTCGGAGTTCAGGATATTTGTGAATAAATCGCAACAATTATGGACCAATTGTATAAATTCTCTACAAACACTTCCAACTTTGAATACTTCACACAAATCTCTGTACGCCATCGTTAAACAAAACTTGCTTTTGCAAACAGTTAATAACTTCGATGGCAAAGCGAAAGACTTGATTAAGCATCTCGCCAATCGAATCGTAAAACGAAAATCGATAATAGCTGAGAGAAAACCGCGACATCCTCGCACTGGTCCAGCCTGTAGTTGCACAGATTGCGGGAAAAATTTTCTAAGCCCATATTACCTGAATATGCACTTACGCAACAGTGGCCAGAAAGAGGCGTGTTGGATGTGCGGTGCCATGCTAATCAGAGGCCAAGAGATGCAACAGCATTTGCACAAAATACACAAAACTGAAATGTTCCTGTGCACAGAATGCCCAATGCTGTTTAAAACTGAAGTGGATAGGAAGCGTCACACCAAAAAATGTCACAGCCCAGGTGTTATGACGTGCCCAGATTGTGGTCGGACATTCCAAAGGAGTGCATCCTATGATGTGCACACCCAAATGCACGCAGTACGGACTTGCAGAGCTTGTGGTGCACAGTTCACTAATCGTGGCTGCTACAGAGTGCACAGATCCAAATGTGAGCCAGGAGCTAAACCTGATTTGAAGACGATACCAAGGAACAGGCGGTCAAATATTCGTGACCCGGCAACATTTACATGTGACTATTGTGGCAAGACTTACCATTCCAGACCTCAATTGAAAAATCATATTTTATGGATTCACATGGATATAAGACCTCATCAGTGTCAGTGGTGTGGTAAAAGGTTCTACACTTCAGCCCGGTTAGCAGAACATTCTGTGGTACACACTCGGGTCAGGAATTTTGAATGTGATATCTGCGGTGCGAAATTAGTGTCTAAAATGGCGGCAGTGTACCATAGGAGACGTCACACAGGAGAAAGACCCTATGAGTGTCCGGATTGTGGGGAAAAGTTCATCTCTTCATCAAGAAGATCAGAGCATGCTAAAAGGAGACACAACAAAGGTTCTCGTATCCGCTGTCCTGAGTGCCTTGCAAGCTTCGTAAGAAGTCATGAGTTGAAGAAGCATATGGATAAAGCCCATAGTGTGGAAAATAATGTGGTAACACTTAACAAGAGCAAAGGTTTTGATATGCCAACGGCTGTATGA
- Protein Sequence
- MTRQVDIKALVSHVVRGDGVNKCRICMGDTSEGQVYLNDTVMMDGDKPITLSELLETITGIQVKEEGDLPDGVCPKCSKCAINAAEFRTLCQQAANQWDITITLLHDLPTRCLDNKTIFAILEKTQMIVINDKKKSYNTTTAAQRLTTHLIKTAVDKEDGHFKCPDCKKEFTNAFQLYQHLKESPELKRACYICGTIMSHNDILCHMINEHKEVPYSCKKCTALFCSYNKYLKHLTKAHSKGVTTCMECGRTFQTHNAFHAHVNVHVLKTCPGCNKLFRNHSCYIYHVKVCCNLVHTKQITPSKILKPKKKVIVTVKNKISNRKVKVGPRGAANTECICDYCKKKFAGKKFVAAHIQIVHMRNTHRPCIYCGKLLASAHMSEHVKTHESKKTYKCSQCEVVLNTKLGYNQHLRLHTGERPYTCKFCGQTFSASSRRSEHIRKVHKSQDIVLKQECHLCPAKFRLPYRLKQHLKSVHNDDQDTLPKFECDTCHEKFAVKYKKIQEEMKADWSAWFQVVEETDLPAGLCCACTDNAISTWQFRHLCRESHRQWTQISTLLMRTDVPTTKDKTFFISTNGTLLRDHMNNIHTLTDATKRLNFLTGNANKVRAKYKKKQSKAAVSKSKCKDCGKEFALPYFLNRHLINTLKRACTLCGKVVSREKLAIHLQRVHRRFVEFCNICYKVFDDKNHLDRHIEILHGDSSLQCNICKLGFKSERSLNAHMYTHTLFNCSSCNSCFENQKCYLYHRNNCKGSKCTKQDVYECHDCGSKYTKKPSLRVHIVQKHLNVLPYICQICGKRSSSKTHHQSHELVHKKERKVYQCYCGAKMRTVLGFHMHQRIHSGEKPYECEECGDRFLSASRRLDHIKRRHRSKYHGCLECDARFVRPSELKKHCRLAHFVQEDQLFPRGLCISCTSVAVSASEFRIFVNKSQQLWTNCINSLQTLPTLNTSHKSLYAIVKQNLLLQTVNNFDGKAKDLIKHLANRIVKRKSIIAERKPRHPRTGPACSCTDCGKNFLSPYYLNMHLRNSGQKEACWMCGAMLIRGQEMQQHLHKIHKTEMFLCTECPMLFKTEVDRKRHTKKCHSPGVMTCPDCGRTFQRSASYDVHTQMHAVRTCRACGAQFTNRGCYRVHRSKCEPGAKPDLKTIPRNRRSNIRDPATFTCDYCGKTYHSRPQLKNHILWIHMDIRPHQCQWCGKRFYTSARLAEHSVVHTRVRNFECDICGAKLVSKMAAVYHRRRHTGERPYECPDCGEKFISSSRRSEHAKRRHNKGSRIRCPECLASFVRSHELKKHMDKAHSVENNVVTLNKSKGFDMPTAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00723354;
- 90% Identity
- -
- 80% Identity
- -