Bsel000037.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Boloria selene
Gene Symbol
-
Assembly
GCA_905231865.2
Location
HG993150.1:436191-445965[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.17 15 6.9 2.9 1 23 246 268 246 268 0.95
2 20 10 9.3e+02 1.3 0.1 6 23 280 298 280 298 0.94
3 20 0.43 41 5.5 0.1 3 23 309 330 308 330 0.93
4 20 9.8e-06 0.00091 20.2 0.2 3 23 356 376 355 376 0.98
5 20 3.8e-05 0.0035 18.3 2.1 1 23 383 406 383 406 0.96
6 20 0.0028 0.26 12.5 0.3 1 23 412 434 412 434 0.97
7 20 0.0087 0.82 10.9 4.7 1 23 440 462 440 462 0.98
8 20 0.047 4.4 8.6 3.5 1 23 599 621 599 621 0.95
9 20 0.00016 0.015 16.4 2.1 2 23 628 650 627 650 0.92
10 20 1.4e-06 0.00013 22.9 2.0 1 23 656 678 656 678 0.98
11 20 8.8e-07 8.2e-05 23.5 4.2 1 23 684 706 684 706 0.99
12 20 0.00019 0.018 16.1 2.7 1 23 712 734 712 734 0.96
13 20 1.4e-05 0.0013 19.7 2.2 1 23 740 762 740 762 0.97
14 20 0.018 1.6 9.9 3.8 1 23 768 791 768 791 0.92
15 20 0.88 82 4.6 0.4 2 23 847 867 847 867 0.94
16 20 1.1e-05 0.00099 20.1 0.9 1 23 873 896 873 896 0.95
17 20 0.00021 0.02 16.0 12.7 1 23 902 924 902 924 0.97
18 20 1.4e-05 0.0013 19.6 0.2 1 23 930 952 930 952 0.98
19 20 0.00015 0.014 16.4 0.7 1 23 958 980 958 980 0.98
20 20 0.00058 0.055 14.6 2.1 5 23 989 1007 986 1007 0.95

Sequence Information

Coding Sequence
ATGAGTACCGAGACATCAGAACCGCCGATAACTATTGATCTTACCAGTTACCTCGCAATTGATGATGTGCAAGATCTATCTCAAATTTGTCGACTCTGCGGGATAGTTCCGCCACAGCCAGTTATCCCGCTCTTCGGGCAGGAATGTCGAAAAAACCGTATTATACAGAAATTGAACAAATATTTACCCGTAAAGGTTGATGACAAGGACCCACTCCCAAAATCAGTGTGCCACAGCTGTGCACAACTTCTTGTGAAATGGCACATGTTTACACAACGGAGTATAGAAGTAAATTCATTATTAAAACAGAGATGTCTACGACAACCAACTGCTACAAATGAACAAAACTCAATAAATGTAAATGAAAACAGCAACTATGAAGATGCTGATACCTACACATACAATGCGGGTACTTCAGTTGGCACGTCACCAGAGCAATATTTAATTTCCATTGTAAAAAATCTCTTGAGTGACGATTACTTTAAAGCTTTGGACATTGACGAGGGCAACACTAATTTAGAATACGTCTGCCAAATATGTCCTGGCTATCCCGCCTCGAAGTCTATCGAACATTTGTGCTCTCATATAGAGTCTTCACATAACTCTAAAACTTTTGATAAACAAGCTATAGAAGAGTATTTAAAGGAAAATATAACGTTTGAGGAAGTCCTCGTGGACGATATTGCTGATGATTTTGAACTTGAACAAGAAAAAGATGTGATAAAATTACCTAATTTCTTTTGTCCATATTGTGATAACGCCTTCTCATCAACAACTCGTCTGATATGTCATTTAAACAAACATATAGAGGTCAGTATCGAGGACGGAATTACGTGTTGTGATCACTACTATCCAGACAAAAAAACTTTTGTCATCCATCTGCAAGAAGCACACGTAAATAGACAAGTGACGGGAAAGGAAATGTGCAAAAGCTGTGATTTCACAGCGAACAACGTTGATGAACTACAACTACACATAATCCTAGCTCATCCAGGGAGTATAGACAATTGGCAGAAACCCAAAAAAGAACCGAGTCCAAAAAATCAGAAGTTCATACCAGCAGCCTGTCCCGAGTGTGATAAAGTTCTCTCTAATAAATATAACATGCTGGTTCACATGAGAAATCATAATAAACCCAACACCAAGTTCGCGTGCGACAAGTGTAGTAAGAGTTACAAGAGCCAAGCGAGCTTGTCTCATCACCAGAAGGTAGTTCATGAAGGGTTACTTCGTTATTCTTGTCAGTACTGCGGTGAAGCGTTCCCTTCCAGGATGACCAGAGATATTCACACCCGTATTCACACTGGGTGTAAACCATTCTCGTGCAAGTACTGCTGCAAGAGCTTCAGAGCAAAGAACAGCCTGGACAGGCACATGGACATGCACTTAGATATACGGAAATACCCATGGTCACCTTTCTCGGACCAGCATGAACGTAACGGAGAGGGTCGCAATGAAACAAACATTGAAAAAATTGCCAAATCTAATGGCGACTCTATCGCTTCGGACGACGAACCTCTCGCGAGCTTGGCAAGTAAGAAATCGACTCGAGATTTGTACCAAGACTTCTATAACGCTTTGAAGAAGTTTAGAGACCACTTCGTGAACACCCACCATGCGCAGTGTTACTCGGACTTCTCCGACACTTCTGACTCAGACGATGACGACGTACAGGATATGGATTTAAATAATTTCGATGATTTAACAGAGAGTAATATGAGAAAGGACAAAATGGATGAAGAGACACGAGTCGAGCTCAGCGAAGTGCAGACTAAAGTGAACGGCAAAGTGTATTTCACGTGTAAGATATGCGGGAAGAACCTGAGTTCATCGCATACGTACGTGTTCCATAAGCGCATTCACACCGGCGAGCGGCCTTGCGTGTGTCACGTGTGTGGAAAGCAGTTCCGGGTACCCAACGGCCTGCAGCGCCACTTGACGGAAACACATTTAAAACAACGGCGCTACATTTGCCTGGTCTGCCACAAGAATTTCGCCAATTCTCAAAACTTGAAACAACACATGCGAATCCACACCGGCGAAAGGCCGTACGTGTGTTCCCATTGCGGCAAGCGGTTCACACAGAGCGGATCTCTCCACGTGCATCTGAAAACCCATTCAGAAATCTTTCCTCACAACTGCGCGGATTGCGGCGCGAAGTTCAGGCTTCGGTCTAGTTTGAAACGGCACAGATTAAAGCATACAGGGGAGAGGCCTCACGTGTGTGTGCTCTGTGGGAAAGGGTTTCGTCAGAAGCACGAGTTGGCCAGTCATCAGCTGACGCACTCGGACAGCAAGCCTCACGCGTGCGCAGTATGCGGCGCCGCCTTCCGCCAACGCCGAGCGCTACGACACCACTGCCGCCGCCTGCACCCCGCAGACATACCCCTCTTGTTCAGTATCGCGGAAAATGAAATAAAGTCCGAGACCGCAGATAGTCAGGATTTTGTTGTTAAAAAATATCAATCTGTAACAAATCAAAAAGAGAATATTGAAAAGCCACAATCTATAGTAGTAAAAAATGGCAAAAGATACGGAGTGTGTAATATTTGTAAAAAAAATGTGTTAACCGCCTCTTGGAAACGTCACGTACGGTCGCACCAAAGCGTCAAGAGATTCAGCTGCCACACCTGCGGGCTCGGCTTCAGCGACAGCGGCAACCTCTCGCGACACACGAAAGCCATACATTCCGAACACCGTCCTCACTGTTGCCATATTTGTCATAAAAATTTTTCTCGAAACAGCCATCTTCAAGATCATATAAAATCTCATTCGGATACTAGAGAATACGTTTGCGACGTGTGTGGTAAAGCCTCCAAATCAAGTACCGCTTTAAGAATGCACAGGAGAATACATGATAACGACTATAGGTTTCAGTGCGTGTACTGCGAGTCTAAATTCAAAAGACGTGGGCAGCTGACGGCGCACGTGTCGGTGCACACCGGCGAGAAGGCGCACGTCTGCGACTGCGGCAAGACGTTCCGGCTGAAGAGCCAGCTCACGAGCCACGCGCGCCTCCACGACGTAGAAGTGATGTGA
Protein Sequence
MSTETSEPPITIDLTSYLAIDDVQDLSQICRLCGIVPPQPVIPLFGQECRKNRIIQKLNKYLPVKVDDKDPLPKSVCHSCAQLLVKWHMFTQRSIEVNSLLKQRCLRQPTATNEQNSINVNENSNYEDADTYTYNAGTSVGTSPEQYLISIVKNLLSDDYFKALDIDEGNTNLEYVCQICPGYPASKSIEHLCSHIESSHNSKTFDKQAIEEYLKENITFEEVLVDDIADDFELEQEKDVIKLPNFFCPYCDNAFSSTTRLICHLNKHIEVSIEDGITCCDHYYPDKKTFVIHLQEAHVNRQVTGKEMCKSCDFTANNVDELQLHIILAHPGSIDNWQKPKKEPSPKNQKFIPAACPECDKVLSNKYNMLVHMRNHNKPNTKFACDKCSKSYKSQASLSHHQKVVHEGLLRYSCQYCGEAFPSRMTRDIHTRIHTGCKPFSCKYCCKSFRAKNSLDRHMDMHLDIRKYPWSPFSDQHERNGEGRNETNIEKIAKSNGDSIASDDEPLASLASKKSTRDLYQDFYNALKKFRDHFVNTHHAQCYSDFSDTSDSDDDDVQDMDLNNFDDLTESNMRKDKMDEETRVELSEVQTKVNGKVYFTCKICGKNLSSSHTYVFHKRIHTGERPCVCHVCGKQFRVPNGLQRHLTETHLKQRRYICLVCHKNFANSQNLKQHMRIHTGERPYVCSHCGKRFTQSGSLHVHLKTHSEIFPHNCADCGAKFRLRSSLKRHRLKHTGERPHVCVLCGKGFRQKHELASHQLTHSDSKPHACAVCGAAFRQRRALRHHCRRLHPADIPLLFSIAENEIKSETADSQDFVVKKYQSVTNQKENIEKPQSIVVKNGKRYGVCNICKKNVLTASWKRHVRSHQSVKRFSCHTCGLGFSDSGNLSRHTKAIHSEHRPHCCHICHKNFSRNSHLQDHIKSHSDTREYVCDVCGKASKSSTALRMHRRIHDNDYRFQCVYCESKFKRRGQLTAHVSVHTGEKAHVCDCGKTFRLKSQLTSHARLHDVEVM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00212789;
90% Identity
-
80% Identity
-