Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 1.7 9.7e+02 0.2 0.0 10 22 49 61 40 68 0.69

2 3 1.1e-07 6.1e-05 23.3 0.1 5 41 129 165 125 169 0.83

3 3 0.25 1.4e+02 2.9 0.0 1 23 185 207 185 207 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	1.7	9.7e+02	0.2	0.0	10	22	49	61	40	68	0.69
2	3	1.1e-07	6.1e-05	23.3	0.1	5	41	129	165	125	169	0.83
3	3	0.25	1.4e+02	2.9	0.0	1	23	185	207	185	207	0.94

Coding Sequence: ATGGCATTTAAAGAAAGAAACAGCTCACAGAATAAGAAAATAATACATGATGATTATAATACAATAGAGTCAACAAAGGAAAGCGGAAGTGTTACAAGGAAAAGAAAAAAAATATACACAGAGGTAAAAATGGCGAAGCATGTGGAGGTTATAGAGAGCAATACCTTGTCGCAATGCAAGGCAATATCATACAGTGTGCAGCAGAAAGCAAAGCATAAGGAGTTGAATAGTGACTGTAAATCGCTGACATTAAGTGAAACTAAAAAGAAAAAAGAAATCAAACAAAAAGATGATGAAATCATGGATAATACGATTGATTCAAAAAAATCAAATGTATCATTCAATGTTCCAAAGAAAAAAATGAAAAAGTACACCGAGGCGGATGTACAGAAGTGTGTAGAAGCTGTACAGAGCAATAGAATGACGCAATCCAAGGCATCCATCTTATACAAAGTGCCGCGGCGAGCTATATATAACGCGTTCCAGAAAATCAAAATGGCGTCATCTAGTGACTCCATGCAGTTGTCAAAGCCCAAACAATCCGAACTTTACACGGAGGAGAACTTGCAGAAGTGTTTGGAGGTTGTTAAGAATAAGACCATGACGCGTGCTCAGGCATGCTAA
Protein Sequence: MAFKERNSSQNKKIIHDDYNTIESTKESGSVTRKRKKIYTEVKMAKHVEVIESNTLSQCKAISYSVQQKAKHKELNSDCKSLTLSETKKKKEIKQKDDEIMDNTIDSKKSNVSFNVPKKKMKKYTEADVQKCVEAVQSNRMTQSKASILYKVPRRAIYNAFQKIKMASSSDSMQLSKPKQSELYTEENLQKCLEVVKNKTMTRAQAC

Sequence clustering based on sequence similarity using MMseqs2