Basic Information

Insect: Boloria selene
Gene Symbol: -
Assembly: GCA_905231865.2
Location: HG993159.1:1562728-1568578[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 5.5e-07 0.00031 21.0 0.0 1 38 156 193 156 200 0.88

2 4 0.031 18 5.8 0.0 9 30 239 260 236 261 0.94

3 4 1.1e-05 0.0063 16.8 0.0 5 33 370 398 366 406 0.84

4 4 8.6e-07 0.00049 20.4 0.0 1 36 426 461 426 465 0.93

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	5.5e-07	0.00031	21.0	1	38	156	193	156	200	0.88
2	4	0.031	18	5.8	9	30	239	260	236	261	0.94
3	4	1.1e-05	0.0063	16.8	5	33	370	398	366	406	0.84
4	4	8.6e-07	0.00049	20.4	1	36	426	461	426	465	0.93

Sequence Information

Coding Sequence: ATGGGACAAAACAAAATAATTCAAAATATAGTTAGATGCAAATGTTGCTTAGGAGAAGACAAATTAAAAGATTTGTGGACTGAATATAATAATGATGGCGAATGTGAGATATATGGTGAAATGTTGAGTGATTGCTTTGCATTAGATTGGGAACAGCCAACTATAAGATCTGATTCTGATATAGAACATATTTGTACCATCTGTGTATCTAAATTGTATGTCGCTGTACGTTTAAAAAAGGAAATATTATTGTCTGCGCAATTGTTACTGGAAGAAATTAAAGATGATTTATGTGAAGTGAAGACAGAGGATGATTCTGATACAGAAATAAAAACAGAGTATCTAAATATAGATTATATAGAGGATGAAGATATCAGAACAGAACAATCAGATATTAAAATGGAGTGTCCAACAAAACCAATTGATGAATTAAATACATACCTGAAATCTAAATCTAAAAAGTACACTGAAGAGGACTTGAAGAAATGCCTTGAGGCCGTTAAAAGTAAAACTCTGTCCGAACACAAGGCATCCTTAGTTTATAATGTACCAAGACAGACAATTCGAAGTGCTCTCAATAAAGTGCCGCCCTCAAAAGAAAAAAGCAGTTTACAGGATAAGGAAATAATAGATGGTGATAATAATACAAAAGTAAGTGGAAGTGTAACAAGGAAAAGAAAAAAAGGATACTTAGAAGTAAAAGTGGAAAAGAATGTGGAGGCGGTGCAGACCAATACCTTGTCTCAGTGCATGGCGACCTCCTCATACAGTGTGCCGCAGAAAGCCAAGCATAAGGAGATTGCAACAAGTAACTCTAGTGAGTATGAGTTCCAAATATCCATTCCAAGATATAGGAGCTTATTTCTGCGTTTATTTTGCACTTGTAAAGTCCACCAGACCAAAGTCATATTTGCATTTGGCAAGAGTAGTGGACTATGGCCTGATCCTAATAAACTGCCGCCATTAAATGAAACTATAAAGAAAAAAGAAATCAAACATAAAAATGAAAAAATTATAGAAAGTGACGATAATTCGATGGATTCACTGAAATCAAATGAATCATTCAATGTTCCGAAGAAAAAAGTGAAAAAGTACACGGAGGCGGATGTACAGAAGTGTGTAGAAGCTGTACGAACCAATAGATTGTCGCAATGCAAGGCATCCACCATGTTCAATGTGCCCCGGCAAGCTATACATATCGCATTGGAAAAAAGCAAATTGTCTTCACCAAGTGTTCCGGTGGAGTTGATTAAACCTAACCAATCCAAGCTATACACGGAAGAGGACTTCAAAAAGTGTTTGGAAGCTGTCAAGAATAAGACCATGACGCGTGTTCAGGCCTGCAAGACATATAATGTACCAATGAGTTCCCTCCATGCTGCTATAAGTAAATATTTCAACGACGCAGATAAAAAAACAGATGCGCAAAAGGCTCAAGAAAATGTGGATTGTGTAATAAATTATACGAACGCAACTCCGTTTAGCGGGTTCCATAGAGCGGGATATGCTTGTCTCTTTTGCTCTAAGATATTTGAAGAACCAGCACATTTAAAAATACACACTTTAAAAACTCATAGCAAACAGCGAGCGAAAGTAAGGCCATCGAGAGCAATTAAACTAGACGTAACAGACCTGAAGTGTAAAATATGTGACGAAAAAATCGAAACACTTGAAAGTGTTTTGCAACACTTGAACTCGATTCACGGGAAGAAAACTTTCACTGGCATACGCGAATTTTTTATACCATTCAAATTTGAAAGTGAAGTGTTAAAGTGTGCGGTTTGTTCGGAAACGTTTCACTGTTTCAAACTTTTAAACGACCATATGAATAGTAATCACTTTAAAAATTTTGAGTGTCATGAATGTGGACGCGGGTTCATAAGTAAACATTCTTTACGAGCGCACAGACTTCGACATGAAACAGGAGTGTTTAAGTGTAAATTTTGCTCCAAAGAGTTTTCAAGCCAGGTGCGAACGAACTCCCACGAACGTACAGTACATATATACAACAACTATCTATACACTTGTGGGTATTGCTCGGAACGATTTTCCAGTTTAGCTAAAAAAAAACAGCACGAAGTATCAAAACATGGCGCCGTACAAACTTTATTTAAGTGCAAAGCGTGCAGCAAATCGTACAAAGATTTACATGCCCTAAGAACTCATGTAAAAGCGTTTCACTTAATGATGCGTCCACACAAGTGTGAAAAGTGTGATTTCAGTGGGTACTCGCCCCATGATTTGAAAAAGCATATGGTAACACACACTGGGGAGAAGAATTTTAGTTGTGACATTTGTACTAAGTCGTTTGGAGTGAAGTCTACACTTCAACAGCATATGCGGATACATGCGAATGATAGAAGGTTCAAGTGTGAACACTGTGGGCAGTCGTTCGTGCAGAAGTGTGCTTGGAAAACGCATACGCTGACAAAGCATGCTGAATCTGCGTAA
Protein Sequence: MGQNKIIQNIVRCKCCLGEDKLKDLWTEYNNDGECEIYGEMLSDCFALDWEQPTIRSDSDIEHICTICVSKLYVAVRLKKEILLSAQLLLEEIKDDLCEVKTEDDSDTEIKTEYLNIDYIEDEDIRTEQSDIKMECPTKPIDELNTYLKSKSKKYTEEDLKKCLEAVKSKTLSEHKASLVYNVPRQTIRSALNKVPPSKEKSSLQDKEIIDGDNNTKVSGSVTRKRKKGYLEVKVEKNVEAVQTNTLSQCMATSSYSVPQKAKHKEIATSNSSEYEFQISIPRYRSLFLRLFCTCKVHQTKVIFAFGKSSGLWPDPNKLPPLNETIKKKEIKHKNEKIIESDDNSMDSLKSNESFNVPKKKVKKYTEADVQKCVEAVRTNRLSQCKASTMFNVPRQAIHIALEKSKLSSPSVPVELIKPNQSKLYTEEDFKKCLEAVKNKTMTRVQACKTYNVPMSSLHAAISKYFNDADKKTDAQKAQENVDCVINYTNATPFSGFHRAGYACLFCSKIFEEPAHLKIHTLKTHSKQRAKVRPSRAIKLDVTDLKCKICDEKIETLESVLQHLNSIHGKKTFTGIREFFIPFKFESEVLKCAVCSETFHCFKLLNDHMNSNHFKNFECHECGRGFISKHSLRAHRLRHETGVFKCKFCSKEFSSQVRTNSHERTVHIYNNYLYTCGYCSERFSSLAKKKQHEVSKHGAVQTLFKCKACSKSYKDLHALRTHVKAFHLMMRPHKCEKCDFSGYSPHDLKKHMVTHTGEKNFSCDICTKSFGVKSTLQQHMRIHANDRRFKCEHCGQSFVQKCAWKTHTLTKHAESA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00213906;
90% Identity: iTF_00213906;
80% Identity: iTF_00213906;