Basic Information

Insect: Boloria euphrosyne
Gene Symbol: pol
Assembly: GCA_951802675.2
Location: OX637873.1:13456032-13462959[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.016 1.6 10.2 0.2 5 23 254 272 252 272 0.94

2 5 1.7e-05 0.0017 19.5 2.6 1 23 278 300 278 300 0.98

3 5 3.7e-06 0.00036 21.6 0.2 1 23 306 328 306 328 0.97

4 5 0.00038 0.038 15.3 2.8 1 23 334 356 334 356 0.98

5 5 0.19 19 6.8 0.2 1 21 364 384 364 385 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.016	1.6	10.2	0.2	5	23	254	272	252	272	0.94
2	5	1.7e-05	0.0017	19.5	2.6	1	23	278	300	278	300	0.98
3	5	3.7e-06	0.00036	21.6	0.2	1	23	306	328	306	328	0.97
4	5	0.00038	0.038	15.3	2.8	1	23	334	356	334	356	0.98
5	5	0.19	19	6.8	0.2	1	21	364	384	364	385	0.90

Sequence Information

Coding Sequence: ATGATTTGGATATTGGAAATATCGGAGATAATTATGATCTCGAAGCCTGGCAAACCACCTCATCTTGTATCTTCTTATAGACCAATCAGTTTACTACCAACCTTATCAAAGCTGTTTAGGAAAATCGTCCTAGGGTTATCACGAATACTTAGCTATAATAATTCTATCCCTCAACAGCAGTTTGGTTTCCTAACTGGCCACCCTACTATAGAACAAGTCCACCGTGTTGTCCATAAAATAAGACAAGCTCTCGAGGAAAAGCAACTCAGCTTCCACACAACCTCTACACGCTTCTCCTACTTGGAAGATAGAATATTCAGAGTAAAGATTAATGATGACTACTCTGTCTTTCATGATATAAAAGCGGGGGTTCCGCAAGGTTCCATCTTGGGTCTCACTCTGTATCTTATTTACACTGCAGATATACCTACCACAGATAACGTCTTATCTGCCACATTCGCCGATGATACCGTTGCCCTTTGCAACCATCATGACCCCAGTGTAGAATCATTAGTTCTAAAGAATCACCTCAACAAAGTTAACAAATGGATGGAAAAGTGGCGCAGTAACAGTTCTTACAAATCGGTGCATGTCACTTTCACCTTGAAAAAGGGCAACTGTCTCCCCGTTAAACTAGATTACGATGTTCTTTCTcatcaagaaaaatatttaggcaTGCACCTCGATAGGAAGCAGACAAGGAAGACTCATACAGAAAAATCGCGAGGAGTTAAACATAAGACTGAGAAATTTAAACTGACATGTAATGCGTCTTTCAAGTCGAGAGCGAACCTGCTGAACCACGAGATGCTGCACTCGGGCGTGAAGAAGTTCTCGTGCGACATCTGCCGCCAGCGCTTCGCGCACAAGACCAGCCTCACGCTGCACATGCGCTGGCACACAGGTGTGAAGCCGTTCTCGTGCGCGGCGTGCGGCAAGAGCTTCAGCCAGAAGGGCAACCTGTCGGAGCACGAGCGCATCCACACGGGCGAGAAGCCGTACCAGTGCGGCGAGTGCCCGCGCCGCTTCACCACGTCCTCGCAGCACCGCCTGCACGCGCGCCGccacgcgcgcgccgcgcccgagCGCCACCGCTGCGGCAAGTGCGGCAAGCGTATGGCATCCCGCAACGCGTGGGCGCTGCACGTGCGGCGCGACAGCTGCAGCGCGCGCGCGCAGCGCAGGTTGCTCGGGAGGAGTaagCAACCACACAAACAAATAAGTCTTCTAGTCACTGACAAATCTCAAGAAGTCGACACTGTAGAAGAAGTAGTAGAGCAGAATATACAGATAGAAGAAGAAGCAGAGATTGAGACAGAAGAGAGCGTGATATACGTGGCGTACGACGCGGACGACTCCGACGCGACCGCCTTCCACATACTGGACCCTGAACAGGCTGTCAATTTAGAAGACAGCAAATTGCTCACAACGTGTGAGCTGTATTCCGGTTCCTCGCTGCTGGTGCCGCAGCAGCTGGAAGAACTGAAAATGGACCTGAACAACGAGGAGTTGGAACTGGAAGAAGATCAGGAAATAGAATTGGATGCAGATCAGCTTATGTTGGATGGAGAAAGTATACCGGTGACGGACGAGGCGGGCAACCCGCTGCACTTCACGATGCAGGACGGCACCAAGCTCGCCATCACCTCCGTGGACGGGAAGACGCTGCAGGTAATAACGCAGGACGGCCAGACCATACCTGTTGAAATCAATGGATATAATAATGAAGAgGACTCTGAGGCGATGGCGGAGGCGAAGGGCGCGGAGGAGACGTCCGTCACACACTTCTACACGCTCGTATAG
Protein Sequence: MIWILEISEIIMISKPGKPPHLVSSYRPISLLPTLSKLFRKIVLGLSRILSYNNSIPQQQFGFLTGHPTIEQVHRVVHKIRQALEEKQLSFHTTSTRFSYLEDRIFRVKINDDYSVFHDIKAGVPQGSILGLTLYLIYTADIPTTDNVLSATFADDTVALCNHHDPSVESLVLKNHLNKVNKWMEKWRSNSSYKSVHVTFTLKKGNCLPVKLDYDVLSHQEKYLGMHLDRKQTRKTHTEKSRGVKHKTEKFKLTCNASFKSRANLLNHEMLHSGVKKFSCDICRQRFAHKTSLTLHMRWHTGVKPFSCAACGKSFSQKGNLSEHERIHTGEKPYQCGECPRRFTTSSQHRLHARRHARAAPERHRCGKCGKRMASRNAWALHVRRDSCSARAQRRLLGRSKQPHKQISLLVTDKSQEVDTVEEVVEQNIQIEEEAEIETEESVIYVAYDADDSDATAFHILDPEQAVNLEDSKLLTTCELYSGSSLLVPQQLEELKMDLNNEELELEEDQEIELDADQLMLDGESIPVTDEAGNPLHFTMQDGTKLAITSVDGKTLQVITQDGQTIPVEINGYNNEEDSEAMAEAKGAEETSVTHFYTLV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -