Basic Information

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.015 1.5 10.3 2.0 1 23 50 72 50 72 0.96

2 7 0.72 72 4.9 0.2 2 23 99 121 98 121 0.90

3 7 0.00013 0.013 16.8 0.9 2 23 144 165 143 165 0.96

4 7 1.2e-05 0.0012 20.0 0.4 1 23 169 191 169 191 0.97

5 7 0.033 3.3 9.2 1.6 1 23 196 219 196 219 0.85

6 7 0.18 18 6.9 1.0 2 19 227 244 226 249 0.85

7 7 6e-06 0.00059 20.9 0.5 2 23 257 279 256 279 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.015	1.5	10.3	2.0	1	23	50	72	50	72	0.96
2	7	0.72	72	4.9	0.2	2	23	99	121	98	121	0.90
3	7	0.00013	0.013	16.8	0.9	2	23	144	165	143	165	0.96
4	7	1.2e-05	0.0012	20.0	0.4	1	23	169	191	169	191	0.97
5	7	0.033	3.3	9.2	1.6	1	23	196	219	196	219	0.85
6	7	0.18	18	6.9	1.0	2	19	227	244	226	249	0.85
7	7	6e-06	0.00059	20.9	0.5	2	23	257	279	256	279	0.94

Coding Sequence: ATGATAATTATAGTAAAGGAAGCAGAAGTCCCAAAATTGAGAGTTGTTGCCAAGAGAGAATCTAATGTGAACATTTACCAGGAAAATATTTCGACTATCCTTTTAAATACAAACGCGACCCCCATCCGTTCGAGATCCAGCCTCGGTTACACTTGCTGCTTTTGTCCTAACCAGTATCGAAGTCCAGCTGAACTTAAGGAACACTCGCAGCAGCACACAGCGTTAACTAAATCTAATTTCATGTCTGGTGTATCCAAATACGATTTTTCAGTTAAATTAGACGTAACTGACTTAAAATGCACTATCTGCGATAATGCAATACCAACTATACACGAAATAACCGAGCATTTGCAGGAAAAACACAACAAGCCGTACCATAAAAGTGCCAATCACTTTATAATTCCTTTTAAATTCGACGCTGATGTATTGAACTGCCTTATTTGTAAGAAGGTATTCaataatttcaaagttttaACGGAACATATGAATTCTCATTACGAAAATTACATGTGCGAGGTTTGTGGCGCTGGTTTTGTTACTCGGAAGACTTTGAAGAGACATGTCTATAGACATGAAACTGGCAGCTTTTCTTGTAAATTCTGCAGGAAAACCTTTGAAACGAAAGTAAGAAAAGTCGAGCATGAGAGAGCTGTACACATTTATATGAACAGAAGGAACAAATGTGCGTTCTGTGGAGAAAAATTCACAGATTACACCAAGAAAAATGATCATGAAGTCGAAAAGCATGGCGTCAAGCCGCTGGTAATAAGCTGCAAATATTGCGATAGGAAATATTCTAATCAAAGAGCTTTAACAGTACACCAGAAAGCTGCACACTTGTTGgtgaagaaaaaataa
Protein Sequence: MIIIVKEAEVPKLRVVAKRESNVNIYQENISTILLNTNATPIRSRSSLGYTCCFCPNQYRSPAELKEHSQQHTALTKSNFMSGVSKYDFSVKLDVTDLKCTICDNAIPTIHEITEHLQEKHNKPYHKSANHFIIPFKFDADVLNCLICKKVFNNFKVLTEHMNSHYENYMCEVCGAGFVTRKTLKRHVYRHETGSFSCKFCRKTFETKVRKVEHERAVHIYMNRRNKCAFCGEKFTDYTKKNDHEVEKHGVKPLVISCKYCDRKYSNQRALTVHQKAAHLLVKKK

Sequence clustering based on sequence similarity using MMseqs2