Basic Information

Insect: Boloria euphrosyne
Gene Symbol: RREB1
Assembly: GCA_951802675.2
Location: OX637892.1:5018513-5037392[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.18 18 6.8 0.7 1 23 93 116 93 116 0.93

2 12 5.6 5.6e+02 2.1 0.2 2 12 149 159 149 169 0.83

3 12 0.02 1.9 9.9 0.1 1 23 295 317 295 317 0.97

4 12 0.0011 0.1 13.9 0.4 1 23 326 348 326 348 0.99

5 12 0.00065 0.065 14.5 2.0 1 23 354 377 354 377 0.97

6 12 0.0026 0.26 12.6 1.6 1 23 724 747 724 747 0.96

7 12 0.00022 0.022 16.0 1.3 2 23 939 960 938 960 0.97

8 12 0.022 2.2 9.7 5.3 1 23 966 989 966 989 0.97

9 12 0.18 18 6.8 0.9 1 23 1020 1044 1020 1044 0.90

10 12 0.61 61 5.2 0.1 1 23 1066 1089 1066 1089 0.85

11 12 0.02 2 9.8 0.3 2 23 1129 1150 1128 1150 0.92

12 12 0.025 2.5 9.5 5.3 1 23 1156 1178 1156 1178 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.18	18	6.8	0.7	1	23	93	116	93	116	0.93
2	12	5.6	5.6e+02	2.1	0.2	2	12	149	159	149	169	0.83
3	12	0.02	1.9	9.9	0.1	1	23	295	317	295	317	0.97
4	12	0.0011	0.1	13.9	0.4	1	23	326	348	326	348	0.99
5	12	0.00065	0.065	14.5	2.0	1	23	354	377	354	377	0.97
6	12	0.0026	0.26	12.6	1.6	1	23	724	747	724	747	0.96
7	12	0.00022	0.022	16.0	1.3	2	23	939	960	938	960	0.97
8	12	0.022	2.2	9.7	5.3	1	23	966	989	966	989	0.97
9	12	0.18	18	6.8	0.9	1	23	1020	1044	1020	1044	0.90
10	12	0.61	61	5.2	0.1	1	23	1066	1089	1066	1089	0.85
11	12	0.02	2	9.8	0.3	2	23	1129	1150	1128	1150	0.92
12	12	0.025	2.5	9.5	5.3	1	23	1156	1178	1156	1178	0.97

Sequence Information

Coding Sequence: ATGCAGGGGGCAGCCAGCGCCACAGCTCCCCCCGCGGCTGAGCCACCTTCCGCGCAACATATTAAAACAGAAGTCATCAGTGAGGCCAAAATCGAAACTGACAACCAAGAAGAAGAAATGAAAATCGAGCCCCACGAGACTCGCGCCACGCGAACTACTAGTATAGATAGTGATAATCGTTCTGATAGAAGCGAGGAGGAAGATTGTAGAAGGGCGCGCAAAAGGGCAGCTTCATCATCACCATCACCTATACCATTGGATAAAAGAACAGCACGTTTTGAGTGTCCGAAGTGTTTCCAAAGATTCGATTCGATCAATGCTTTCGATCTTCACCGATTTACAGCGCACGGTGATGATAATAGAACTGGGTTCGATGACTACGTAGATTATTCCGTCAAAAAAATCCCAGAAATGTTGCGTAATCGCCATATATCGGTATCAGAGCGATGTGAACATTGTTCTCGAGAATTTCCCTCAGGACAGATCTTGGATATGCATAGGAAAACATGCACAGCATCCACAAGAATAAATAGTCCTGATCGCGATAGACGAGAAGATTTTTTCGCTAAGCTCGACCTTAGAAATAGATCGTTTGGAATACCAGGAACATTGACTCCACCGATGGATCGATTTACACCAAAGTTTGATGATGGACTATCTAATGGTATTAGGCATATTGATGCCGCGAGGGATTTAGCTGATATTCAGTCGATTCTTAACGTTACATCTGCTGGAAGTCTTTTGGAAAGACTAACTGGAACAAGGGTTGCTTTAGAAAATGCTGTCCTAACACCACCGGATACTATTGTAAAAGAACGGGAGCAGGAGGAAACCCAAGACAACTTTGCAGCAGAATTCAGACGAATGAAGCTTCGTGGTGAGTTCCCTTGTAGATTGTGTCCCGCTAAGTTCCCAAACCTAAGAGCTTTGAAAGGACACAATAGAGTTCATCTTAGTGGAACAGGTCCAGGTCCTTATCAATGCAATATGTGTCCTCATGCATCATTAGACAAAGCAGCCCTTGTACGTCACATGCGTACACATAACGGCGATAGGCCGTATGAATGTGCTGTTTGTAACTACGCCTTCACCACTAAAGCAAACTGCGAGCGCCATTTACGTAATCGACACGCTAAAGTCACAAGAGAAGATGTGAAACGCTCAATTATATATCACCCCTCAGAGGATCCAAACAATGATGAAGTAAATTCTAAAATCGCTCGCGAAGAAGTCAAAAGATCCCTTGCATTCCATACCCCAGAAGTTGAGAGACGCACTGAACCTACAGGACGCAGTACACCACTTACGCATTACAATCCCAGTTACATTGCTGAAAGACATCCTGTTACCTCTCTTACAAAGGCTTTACCCGATACTCCCACCCTAACACCGAGAGAGGCAGAACAACCCATGCCTAGAATAAAAGTTAAAGGTATTGGACAACTTACACAAATACCCGAGTTCAGAACACCAGAAATTTCCTTTAAATCTAATGATATACAACCTGATCCGTATATTGAAGATGCTCCAGTAGACCTTAGTACAAGTGATAACAATAGTTGTGATGTTCTCGATTTAAGTAAGAAAAAACGTGACACAGATGACGATGAGCCAAAAATTTCATCGCGCACGTCATTTGACAACTCTCCATCTGCTGCTGCTACGGCTGCTTTTGAGAAGACACGACTTTTGCTAGCTCAGCAAAGACTTTTTGAAAACTCTCTACCTAAAATAGATCCCGCTTACTACGCAACTCAACTATCCCAACTTTATGCTGGCGCAGTACCTGGCCTTCCCGGTCTGCCTCTTCCCCCATCTTTCCCCATCAATCCCTACTTTCTTCAAACATCTTTTTTTCCTCACCCAACTGATTCACAAGAAATCGCCGAAATAAAACAACGTATTCAGAAAGAGATAATTCGTGGGCTTAGTATGTCTGGTGGGAGGCTAGTAACAAACGAACCTGAAATTCAGCCTAAGCAAGAACCTGAAGAAGAGGATCAAAAGCCTATACCAGTTTCTACTACACCTACACCGCCTCCCCACTCTGAATCTCCACGTCCAATAACAAACAATCTTATTTCTCAAAACGACTCTGTAAAGATGGTAATTAAAAATGGTATTTTAATGCCAAAACAAAAACAGAGACGTTATCGTACTGAACGACCGTTTTCTTGCTCTCAGTGTTCGGCTCGGTTCACACTACGCTCTAACATGGAACGTCATGTTAAGCAACAGCATCCTCAGCACTGGAGTGTCAGACGTCCAGCGCCTAGGGCGCCCCCACCGTACCCTACACCAGACACTTTAGCCGATCGAGTCAAATATGCACTATTGGCTCGTCACTTAGAAAGGCCATTGCAAACTGATCGATCACCAGTTAGAAGAGACTCAGATGAAGTGGCTGACAATGAAGAAGATGAAGATGATACTTTAGTCATAGACGAGAAACCAGATGATCAGAAAGCAGACGAACGCACTGCCGCACACCGAGCTGCGGCGGAAATTCTGATGGCCACCCGTCAGCAAGAACTTAATAAGGACTTTGATCTTAAAATAGCAGGCAACCTCATTAATAAGCCTGTACCGATTACTACAGAGAAAACCGAAACAGGAACTGACCCGATTCCAAGCCAAGATACTGTCATTCCTGTGGTGCCATCTCGTAGTGATGAAGAAGAAGACGAAGAAGGTCTAGTAGCATCTACTAGCGAAGGCAACAACTCTGGAAGCGATGAAAATAAatCCGAATCAGATACTGGAACACAACCACCGAAAAAGAAGTCTGCATACAGTCTAGCACCAAATCGCGTATCCTGTCCCTATTGCCACCGTAAATTCCCTTGGTCCTCTTCCCTTCGACGTCACGTCCTGACTCACACTGGGCAAAAACCCTTCAAATGCCCTCACTGCCCTCTCCTCTTTACCACAAAATCTAATTGCGATCGTCACTTACTAAGAAAACATGGTGGATCCGCTAAAGCGATTCTCGCTGAACCTATTCAAGATGCTATAACTCCACAGACTAATGACAGCCGAAGTGTACCAGAAAGGCCGTTTAAATGTGCTTCTTGCCCAACCAGTACATTTTCGTCGATGGAAACGTTAAAAAAGCACATGGCTTCTCGACATGCTAGTGGGGAGTCTCACCCAAGTTCCCCAAACCCTGAGGAAGATGGGGATGCCAGTTTAGTCTTCAAGTGCCACCTCTGTGAAGCGTCATTTGGGGAGAGAAGTGGGGCGTTAGGACATTTGGCATCCGCCCACTCTTTAGAATATGAACAGTTAGTGAGCAAAGGCGCTTTAGACGCGGCGAGCGACCGCAGCGAAAGCGCTGATGATGACGAAAGAGGCAAATTTCCTGACCATGCCAATAGAAAGGTTGTATGTGCGTTTTGCATTCGTCGCTTCTGGTCTGCAGAGGACCTCCGTCGTCACATGAGGACTCACTCCGGAGAGAGGCCTTTCGCCTGCGATCTGTGCAGACGAAGGTTTACACTTAAGCATAGTATGTTGCGGCACAGAAAGAAGCATCGAGAAGATACGGATGATGAAGAATTATCACCTAGAGATGATGGAACAAATGGATACCGCTACCAAGAAGACGACGGTTCCGGCAACGAGATCCCCAGCAATGTGAACAACAACAACTCGCCGCCCTCCGCGCCCTACGACAAGAAGCTCAAACTGGAAATGACGTCACGCAAATATTCCACCGAGACGGAAAACGATACGGAAAACGGAACCGACCTGATCGGAAAGCTTCTAGGTATCCCAGACAAAACCATCATCAACAAACTTCTATCATCCCCTGATGAAGCCGCGAAATTTTTGGGAGTCAACAAATGA
Protein Sequence: MQGAASATAPPAAEPPSAQHIKTEVISEAKIETDNQEEEMKIEPHETRATRTTSIDSDNRSDRSEEEDCRRARKRAASSSPSPIPLDKRTARFECPKCFQRFDSINAFDLHRFTAHGDDNRTGFDDYVDYSVKKIPEMLRNRHISVSERCEHCSREFPSGQILDMHRKTCTASTRINSPDRDRREDFFAKLDLRNRSFGIPGTLTPPMDRFTPKFDDGLSNGIRHIDAARDLADIQSILNVTSAGSLLERLTGTRVALENAVLTPPDTIVKEREQEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKIAREEVKRSLAFHTPEVERRTEPTGRSTPLTHYNPSYIAERHPVTSLTKALPDTPTLTPREAEQPMPRIKVKGIGQLTQIPEFRTPEISFKSNDIQPDPYIEDAPVDLSTSDNNSCDVLDLSKKKRDTDDDEPKISSRTSFDNSPSAAATAAFEKTRLLLAQQRLFENSLPKIDPAYYATQLSQLYAGAVPGLPGLPLPPSFPINPYFLQTSFFPHPTDSQEIAEIKQRIQKEIIRGLSMSGGRLVTNEPEIQPKQEPEEEDQKPIPVSTTPTPPPHSESPRPITNNLISQNDSVKMVIKNGILMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPAPRAPPPYPTPDTLADRVKYALLARHLERPLQTDRSPVRRDSDEVADNEEDEDDTLVIDEKPDDQKADERTAAHRAAAEILMATRQQELNKDFDLKIAGNLINKPVPITTEKTETGTDPIPSQDTVIPVVPSRSDEEEDEEGLVASTSEGNNSGSDENKSESDTGTQPPKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSAKAILAEPIQDAITPQTNDSRSVPERPFKCASCPTSTFSSMETLKKHMASRHASGESHPSSPNPEEDGDASLVFKCHLCEASFGERSGALGHLASAHSLEYEQLVSKGALDAASDRSESADDDERGKFPDHANRKVVCAFCIRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHREDTDDEELSPRDDGTNGYRYQEDDGSGNEIPSNVNNNNSPPSAPYDKKLKLEMTSRKYSTETENDTENGTDLIGKLLGIPDKTIINKLLSSPDEAAKFLGVNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00961349;
90% Identity: iTF_00825108;
80% Identity: -