Basic Information

Insect: Boloria euphrosyne
Gene Symbol: -
Assembly: GCA_951802675.2
Location: OX637884.1:12054736-12057858[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0013 0.13 13.6 0.4 1 23 296 319 296 319 0.92

2 12 0.015 1.5 10.3 3.0 1 19 337 355 337 359 0.92

3 12 1.2e-05 0.0012 20.0 1.8 2 23 365 386 364 386 0.97

4 12 0.0059 0.59 11.5 5.5 1 23 390 413 390 413 0.95

5 12 0.0016 0.16 13.3 0.2 2 23 417 438 416 438 0.96

6 12 0.00037 0.036 15.3 0.3 2 23 519 540 518 540 0.96

7 12 0.25 25 6.4 0.2 2 23 560 582 559 582 0.96

8 12 9.2e-07 9.1e-05 23.5 4.1 1 23 588 610 588 610 0.98

9 12 0.00069 0.068 14.5 1.6 1 23 615 637 615 637 0.98

10 12 0.0099 0.98 10.8 3.1 2 21 644 663 643 666 0.93

11 12 2.5 2.5e+02 3.2 1.4 1 19 673 691 673 692 0.87

12 12 0.073 7.2 8.1 1.7 3 19 705 721 704 726 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0013	0.13	13.6	0.4	1	23	296	319	296	319	0.92
2	12	0.015	1.5	10.3	3.0	1	19	337	355	337	359	0.92
3	12	1.2e-05	0.0012	20.0	1.8	2	23	365	386	364	386	0.97
4	12	0.0059	0.59	11.5	5.5	1	23	390	413	390	413	0.95
5	12	0.0016	0.16	13.3	0.2	2	23	417	438	416	438	0.96
6	12	0.00037	0.036	15.3	0.3	2	23	519	540	518	540	0.96
7	12	0.25	25	6.4	0.2	2	23	560	582	559	582	0.96
8	12	9.2e-07	9.1e-05	23.5	4.1	1	23	588	610	588	610	0.98
9	12	0.00069	0.068	14.5	1.6	1	23	615	637	615	637	0.98
10	12	0.0099	0.98	10.8	3.1	2	21	644	663	643	666	0.93
11	12	2.5	2.5e+02	3.2	1.4	1	19	673	691	673	692	0.87
12	12	0.073	7.2	8.1	1.7	3	19	705	721	704	726	0.92

Sequence Information

Coding Sequence: ATGGAGGAGGAGATCTTGCGGAGTATTGCCGACTCCGACAAAATTTACCCAGTACTGCTAATACCTAAGAAATGTACACCTTTAGAAACCAACCACGAAGCCACGGACAATGTGTTCATCGGTGTCAACATAACGTCCCCCGACACTGAAGGCAACGAAATGTGCATATATTCAGGCTTCTGCAACGTTAAACTTATAGAGAGTTATGATGTAAATATTCATGAGGAAGAAGGCAATAGCCAATTGACAGATTCAAACGATAATCCAATACCAATTATAGTGTCAGATGCAAATCAAGCATATGCGCCGTACAGCCAATCTCAGGTTTGGATAGATCCAGCTAGAAGCCCTTACGTCTACAACAGTCATGATACAGTGGAGTCGCAAGAGCACTATTCAGTGTACCATCAAACCTCCAGCCACATAACTGTGGAACAGCATAACACATATATAACGCAAAATGTTTACAACTACAAAGAGTCTATCCAATACTCGCCTGTTGAAGAATTCGAGCGTAAGAAgttcaaaaaaattcaaaataatgaaACTAACCAGGCTTTGGACTCCGGTTTGTATGAAAACGACGAATTTGAGTGCGGAGTTTTCTTAACTCACTTACCAGAAGAAATTTTGCACGAAAAAGAGAATAAGGCTAGAGAGGAGTTGAAATATTTGCAAAGTGAGAACGATGCTATAAAGCAGCTGATGTCATCTGATATACAATCTGTGTCGAGGCAGCAAAAGACCATTTTGTACTTGGGTCACGACTCGCACTACGGTCAGACTATACAAAAGATATCAGTAAACGATCCATCCTTAGAATGCGTTGATAATGGCATTGAAAAGGATGTAGTTGTagAAAGCAAACCATCAAACCAGAAAAAGTATCAGTGTGAGAAGTGCAACCAAATATTTGATCAAATCAATGCATTCAAACAACACATGGTAGGAAGCCATAAGAGCACGAAAACTCCTGTAATAGATTCAGATTCTGTGAGTGACGTTAAGTTTATGTGTACAGATTGTGGTAAAATTCTCaagacaaaaaaaaagtttgagcAGCACTGCCTCGGCCACGGTGACCCAGATCTAGAATGTAACAAGTGTCGTAAAGTGTTTGCTTCAAAATTTACTCTAAGAAACCATCAAAAAATTCACCAGAGAAAACATCAGTGCTCTTGTTGTACAAAATCATTTTCCAATCTTAAAGATTTAAGAAATCATCTTGAAAAAatccattttgttttaatctGTAACTTGTGCAATTACACAGCATCAAATTATTCGGAACTGGAAGCTCACAGACAAAACCATAAAGAACCAGAATTAAAACAAACAAGCGAAGATAACTTCACATTATCACTGGATGATGACCTAGCGAGTAACAGCGGAACTTTAACTCCTCCATCGGAAGACTTCAGAATACAATCCGATGAAGATCAATCTCAATTGGATGAAATTGAAAGAGCTGATTCTGTGATTGCGAAAGTGATGTCTAATAAGATTTTTCTTCTACACTCCAAAAAGGCTTTAAAgcataaaagatataaaaagacttgcGACGTATGTTTGAAGACCTTCGATCGCGTGGGGGATTTAAAAAGGCATCTGATAGAGCACGTAATAAGGAGCACTCTCGCAAAAACGCCAGTCAATAAGAACGGCACCCTCACCATACAGTGCGAGGTATGCCAAGCGGAGACTTTCTCAAAGGTCGATAGATACAAAGCACATTTACGGGAACACGCTAAACTTACCTTGTACAAGTGCACCTTTTGTGATAAATCTTTTAGTGATTCTAGTAATTTTtctaaacacaaaaaaatacacGGCACTACATTCTTCCAATGCGATCTCTGTCAACGCAAGTTTAACTCCAAGAAAATGATAGCACAGCATATGGAGTACCACAATAACAACTCTCCCATACCTTGTTTTTACTGCAATAAGGAATTTCATTTTCCATCGATGCTTAATAAACATGTTAAATGTGCTCACACGCGTGAACTGGCCAGATTTCGGTGTAGATTCTGTCAGGAATACTTCAAAACTTTAAAAGAAAAGTGGGATCACGAATGGCGAGTCCATAATGTGAGGAAAATGATTGTAGATTGTCTCATTTGTGGATCAAAATTTAGGAAATATGCTGAACTAAAGCGTCACTGTAACGATGCACACGATATGGAGATACCTCCCGctaaaaaattattaagaaaaagaagaacTTAG
Protein Sequence: MEEEILRSIADSDKIYPVLLIPKKCTPLETNHEATDNVFIGVNITSPDTEGNEMCIYSGFCNVKLIESYDVNIHEEEGNSQLTDSNDNPIPIIVSDANQAYAPYSQSQVWIDPARSPYVYNSHDTVESQEHYSVYHQTSSHITVEQHNTYITQNVYNYKESIQYSPVEEFERKKFKKIQNNETNQALDSGLYENDEFECGVFLTHLPEEILHEKENKAREELKYLQSENDAIKQLMSSDIQSVSRQQKTILYLGHDSHYGQTIQKISVNDPSLECVDNGIEKDVVVESKPSNQKKYQCEKCNQIFDQINAFKQHMVGSHKSTKTPVIDSDSVSDVKFMCTDCGKILKTKKKFEQHCLGHGDPDLECNKCRKVFASKFTLRNHQKIHQRKHQCSCCTKSFSNLKDLRNHLEKIHFVLICNLCNYTASNYSELEAHRQNHKEPELKQTSEDNFTLSLDDDLASNSGTLTPPSEDFRIQSDEDQSQLDEIERADSVIAKVMSNKIFLLHSKKALKHKRYKKTCDVCLKTFDRVGDLKRHLIEHVIRSTLAKTPVNKNGTLTIQCEVCQAETFSKVDRYKAHLREHAKLTLYKCTFCDKSFSDSSNFSKHKKIHGTTFFQCDLCQRKFNSKKMIAQHMEYHNNNSPIPCFYCNKEFHFPSMLNKHVKCAHTRELARFRCRFCQEYFKTLKEKWDHEWRVHNVRKMIVDCLICGSKFRKYAELKRHCNDAHDMEIPPAKKLLRKRRT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00457520;
90% Identity: iTF_00213874;
80% Identity: -