Basic Information

Gene Symbol
-
Assembly
GCA_951802675.2
Location
OX637889.1:4312963-4319619[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.0023 0.22 12.8 1.8 2 23 72 93 71 93 0.96
2 11 0.00092 0.091 14.1 0.7 3 23 101 122 99 122 0.95
3 11 0.039 3.9 8.9 0.1 2 22 130 150 129 152 0.89
4 11 6.5e-05 0.0064 17.7 4.3 1 23 158 180 158 180 0.95
5 11 0.002 0.2 13.0 7.2 1 23 186 208 186 208 0.95
6 11 0.0034 0.33 12.3 1.2 1 21 214 234 214 235 0.95
7 11 1.5e-06 0.00015 22.8 1.6 1 23 569 591 569 591 0.98
8 11 0.00017 0.017 16.4 1.0 1 23 598 621 598 621 0.93
9 11 0.053 5.3 8.5 0.2 1 23 635 660 635 660 0.92
10 11 0.057 5.6 8.4 2.8 2 23 667 690 666 690 0.92
11 11 0.00052 0.052 14.8 0.8 1 22 696 717 696 717 0.95

Sequence Information

Coding Sequence
atggagCCCAGTATGTCTTTCTTCAGTTTACCCTTTGTGGACTCTGAAACTTCTGATCTcgtgtttaataaaaaagttgatgAGTGTGATTATGATTTTCAAAGTGAATTGCCTTCACAAAGTGCTTTGTTGGGTACTGATGATGTAATAGCTCAGTTTTTGACCGCTGATGGTCCTTTAGAAGAACCAGACTTAAATGGGCCAGCTACTTTGCATTGTGAGATATGTCAAAAGAGATTTGATAATGCAAAGAAGTACTATGGACATTTACGAGTACATTCTAAGGATAATCTTTGGATTTGTGATAAATGCCCAAATCAGAAGTTCTCTACAAAACAACAGCTGATGAAACACATCCTTACTCATAAGCCTCTTGCAAGAGTCTGGAAGTGTCCACAGTGTCCAGTGGCATTTGAATCATTATGGCGTCTTCAACAACATGTTTTTGCTAAACACTTTGATTACAgGCCACATAAATGTGATCAATGTGATAAATCCTTCCAGAAATCTTCAGATCTTAAAAAACATAAAGATTTGCATAATAATAACAAACAACACTGCTGTCCATGTTGTGAAAGACAGTTTGGagataaatcaaatttaaagAGGCACATGTTGACTCATACAAATGAAAAACCTTTCAGTTGTACAAGTTGTAATAGCAGATTTACACAGATAGCATCACTAAAACGTCACCAAAAGAACTGTGCTCTATTAAAGAATCGCAATGAAAGTGAGGATAAAACCAGAAAGAACTACGGTTGTGCATGTGGAGAGTTGTTTCAATACAAGAGTGCGTTTTTGGAACATTGTGTAagGCAACATAGCAACAATGTTAATAATGAAGAAGAAAAATTACAAATGCCTCAATCCAATATTGACACAAACAGAACTGAAGACAACATCGTGGATGATATTCTGTCAGCCGAAGATGACTACATGACTATGCCCACTCAGCAAGCCTTACAACATTTCAACCCACCGACCCTACCAGATACAAACACTTATGATAACCTCATGCAAAtagaattttttaaagaaatgaaCCAGCTTCACATATTAGATGAAGAACAAGATCTCCTATACAATGACATTGACTTTGACTCGTTCCAcagcaataatattaataccagTGATATAGATTATATGGGAGATAAGCATGGAACACTATTTGATGATATGACAAATAAAAGCGTAGATCAAGATATCATTAATGCACTATACCAAGTCAAAACCGATCTACCAGATGACCTATTGAATGTAGAACCACCAAAAGCAACCGAACAAAACCCAGTCTCAGTAAACGATTGCGCGACCATATTTGAAAGTGATGTGGACTTAGAAGCTAGTACCAATTTAGCAGCCAATTTAAACCAGTTGATTGGCGAAAATACAGTACAATACATATCTACTGAGGACGATGACATGTTCATAATTAGATTGAATAGTGAGATTGATGCCGAACAATTGACGGATATGTTGAATATTGGCGTAGAGGTGGTTAATACGGGTACTGATGATAAACCGAGTGTGGAAGAACAAAATAATgttgttaataataatgttagtaaTGAGAGTATGCCACCaccaatagttattaaaatagaagATATGAGAGAGCAAAGTGAAAAAGACTCAGCAAATACGgagaaaaagaataaaatgcCCAAACAGGTCAAGAGTAAATGTAAGAAGCAAGTGCTCTACGTGTGCACAACTTGtgataagatatttaaaaaaaaggataatTATAAATCACATATAGCGACACACTGCGCGTCGCTGCGCCGCCACGCGTGCCGGGAGTGCGGCGCGCGCTTCAGCTACCGCTCCACGCTGGTGCGGCACGCGCGCGCGCGCCACCCGCCCcgcgccgcgccccccgcgccgcccgcgcgccCGCACCGCTGCGCCGCGCGCCGCTGCGGGCGCGCCTTCGCCGCCGCCTGGATGTTAAAGAACCACGTGGAGCGCGACCACGAGCGCCTCACGCCGCACGCGTGCGACGCGCCGGGCTGCTCCCGGAAGTTCTACAAGAAATGTGACCTTGTAGTGCATAAAAGGTACCACACGGGCGAGAAGCCGTTCGTGTGCGAGAAGTGCCGCGCCGCCTTCCCGCACGTGTCGCACCTGCGCCGGCACGCGCGCCGCGTCGACTGCACGCGCAGGGTCCAACGACAACAATCCAAGCAAAatcaatag
Protein Sequence
MEPSMSFFSLPFVDSETSDLVFNKKVDECDYDFQSELPSQSALLGTDDVIAQFLTADGPLEEPDLNGPATLHCEICQKRFDNAKKYYGHLRVHSKDNLWICDKCPNQKFSTKQQLMKHILTHKPLARVWKCPQCPVAFESLWRLQQHVFAKHFDYRPHKCDQCDKSFQKSSDLKKHKDLHNNNKQHCCPCCERQFGDKSNLKRHMLTHTNEKPFSCTSCNSRFTQIASLKRHQKNCALLKNRNESEDKTRKNYGCACGELFQYKSAFLEHCVRQHSNNVNNEEEKLQMPQSNIDTNRTEDNIVDDILSAEDDYMTMPTQQALQHFNPPTLPDTNTYDNLMQIEFFKEMNQLHILDEEQDLLYNDIDFDSFHSNNINTSDIDYMGDKHGTLFDDMTNKSVDQDIINALYQVKTDLPDDLLNVEPPKATEQNPVSVNDCATIFESDVDLEASTNLAANLNQLIGENTVQYISTEDDDMFIIRLNSEIDAEQLTDMLNIGVEVVNTGTDDKPSVEEQNNVVNNNVSNESMPPPIVIKIEDMREQSEKDSANTEKKNKMPKQVKSKCKKQVLYVCTTCDKIFKKKDNYKSHIATHCASLRRHACRECGARFSYRSTLVRHARARHPPRAAPPAPPARPHRCAARRCGRAFAAAWMLKNHVERDHERLTPHACDAPGCSRKFYKKCDLVVHKRYHTGEKPFVCEKCRAAFPHVSHLRRHARRVDCTRRVQRQQSKQNQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00782076;
90% Identity
iTF_00248420;
80% Identity
-