Beup024735.1
Basic Information
- Insect
- Boloria euphrosyne
- Gene Symbol
- -
- Assembly
- GCA_951802675.2
- Location
- OX637895.1:7370420-7377860[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.013 1.3 10.4 1.7 1 23 230 252 230 252 0.96 2 16 0.4 40 5.7 0.0 2 23 281 303 280 303 0.94 3 16 0.069 6.8 8.2 0.3 2 23 324 346 323 346 0.93 4 16 0.00055 0.055 14.8 2.1 2 23 352 374 351 374 0.95 5 16 0.0032 0.32 12.4 1.0 1 23 379 402 379 402 0.93 6 16 0.37 37 5.9 0.3 2 23 405 427 404 427 0.96 7 16 0.0042 0.42 12.0 1.9 2 22 434 454 433 454 0.94 8 16 0.0046 0.45 11.9 0.5 1 23 512 535 512 535 0.93 9 16 0.2 20 6.7 0.1 3 23 564 585 562 585 0.92 10 16 0.084 8.3 7.9 0.3 3 23 609 631 607 631 0.95 11 16 0.0005 0.05 14.9 0.6 3 20 638 655 636 659 0.90 12 16 0.008 0.79 11.1 0.4 1 23 664 687 664 687 0.97 13 16 0.00034 0.033 15.4 0.2 2 23 693 715 693 715 0.94 14 16 3.7e-05 0.0037 18.4 4.7 1 23 719 742 719 742 0.97 15 16 0.00016 0.016 16.5 0.6 2 23 749 770 748 770 0.96 16 16 0.0025 0.25 12.7 2.2 1 23 776 798 776 798 0.97
Sequence Information
- Coding Sequence
- ATGGAGTTCGATGAAATAATTGTGAAAGAGAGCCCGGGCCTCTGCCGGTGCTGTCTTTCTGAGGGTTGTTATAAAGACTTGGGTGTGGAGTATGTTTGGATGGATGAAACCGAGGTGTATGCCGATATGTTGTTAGAATGCTTCGATATTAGTATATCCCAACATATAGAAGGGCCAAATGGTCCAAGCCGATTAATCTGTGAAGTTTGCATCACCCGTTTACGAGATGCTTGTAATTTTAAGAAGCAAGTATTGGAATCTGAGAAGAAGTTTATTGATATGCTTGGAAGAGGCGAATTCAAATCTaaagTAATAGTATACGAAGAGCTGATGAAATCTGAAGTTCACATTGATTCTCAGCCACCCGGGGAAGCGGAAGTTGAGTTTCTTGATGAAGACATTGATTACGATgATTGCCCGAATAATGATGATCCAGAACCGTCAGTGTCTGAAGATATAACAGTAGCAACACTACCAATAAAAGGCAAAAGGGGAAGACCCCGAAAGAATGCGGTGAAGTCGGAGAAAAAGAAATCCAAAATGGAGGATAAACCGAAAACTAAAGTAGTTAGAGATATAAAACCTCGGAACATGAAAGGCTGTGAATCGTCTTCGATGCGTAGAAGGAAAAATCTTCAACTAATTTTCAATAACACGACAGTCATACCGTTTAAATGGCGAGGAAAATATCTATGTTTCTATTGTAGCAAAGACATATCTGAGTATTCCGAACTTAGAAAACATACCAAGTCTCACGGAAATTGTTCAACCAAAGATCATTCCTTGAAAGTCTTGAAAGGTGGACAGAATATGGaaataaaaatcgatatttcCGAAATTAGTTGTGAGATTTGTAGCGAAGACTTTCCAGTTTTTGATGATGTTTTAACACATTTACTGGTTAAGCATAAGTTGGAGTTCGATAGGGAAGTAGATATGGCTATGGAAGAATACCGCTTGGTCGATCTAAGTTGCCTTCTATGCGAGGAAAAGTTTACCTACTTCGGTTATTTAGTGTCGcacgtaaataataatcatcCAAAGAATTGTTTGATTTGCGACAAATGTAATCAGAAATTTAATAAGAAACGTGATCTTTTTTCGCACATCAAAAATTATCACCGCGAGGGTGGCTATCAGTGCGACGTCTGTCCTCAAACCTTtagttctttaaatatattaagaaaacaCAAGAGCAATCGCCATTTGACCAGATGTAATCTATGCCAATTAAGACTGCCTTCTGCGGTCCTCAAACAAAAACATATGGAGATGGAGCATCCTGATGATGGATCTCTCCAATGCGACATTTGCTATAAAAATTTTCATACTAAACAAGGTCTAAAAATGCATACGCGTAAATGTAAAGGCGATTTATTCGATATAGCGATTAAAAACGAGGAATTCGAAGTAATGGACTTAGATAGCAACTACGAGAGTGTTAAACGACCAAGTGTCAAACAGATCCGGGAAAATATTGtcatagtaataaatatgtcTACCGCGATAccgtttaatttttacaaaaataaatttaactgcTTCTACTGCTCCAAAGATTTCCCAGACTCTGATTTGATGAGAGAGCACACTGTTATGGAGCACCCTGTATGCGATGTTAAAGAGAAGTGCATCAGAAAATGCCGGGAATCGGTCGCTTGTGTGAAAATCGATATTTCGTCGCTAGCTTGTAAAATTTGCTTCGAAACGATGAACAATCTCGATAATCTTTTGGACCATCTCATTTTAAAACACAATGCAAATTACGACAAATCAATCACAACATGTCTACAACCCTACAGACTAATAAAAGACAATATGGCATGTCCAAACTGTCCTAGTGAAGTATTTCGATTTTTTGGCACTTTATTGAAACATATGAACAATAAGCAcaccaataataatataatctgcGTCTACTGTGGTCAGACTTTTAGACGTGATCAGAATCTACGTGTCCATATCTGGAGACACCATAGAGATGGTAGATTCAAATGTAACATTTGCGGTGCAGAATGTAATATACCGTCGAGATTGTATATGCACATGGCGAAAGCTCACGGTGTCAAAGCAGCAAAATGTCCAAAATGTCCAGAAAGTTTTGCCACACAGTATCTGAGACAAAAGCATCTAATAGAAGCTCACGATTCAGGTCATAAATGTTCGTATTGCGGGAAGCTTTTCACTAGGAATTCCTTTATGCGAGATCATATAAGACGTACGCATTTGAAGGAAAAGAACGTTGAATGCTCCATTTGTAATATGAAGTTCTTCAATAACATTCTCCTGAGGAGGCACATGGTGAAGCACAGTGGGGAGAAAAATTTTCACTGTGACATATGCGGTGAAAGGTTTTATTGGAGGAAAAGTTTGCGAACACACATGGGTAGGCATAATAAGCTAATAAACGCTATATAG
- Protein Sequence
- MEFDEIIVKESPGLCRCCLSEGCYKDLGVEYVWMDETEVYADMLLECFDISISQHIEGPNGPSRLICEVCITRLRDACNFKKQVLESEKKFIDMLGRGEFKSKVIVYEELMKSEVHIDSQPPGEAEVEFLDEDIDYDDCPNNDDPEPSVSEDITVATLPIKGKRGRPRKNAVKSEKKKSKMEDKPKTKVVRDIKPRNMKGCESSSMRRRKNLQLIFNNTTVIPFKWRGKYLCFYCSKDISEYSELRKHTKSHGNCSTKDHSLKVLKGGQNMEIKIDISEISCEICSEDFPVFDDVLTHLLVKHKLEFDREVDMAMEEYRLVDLSCLLCEEKFTYFGYLVSHVNNNHPKNCLICDKCNQKFNKKRDLFSHIKNYHREGGYQCDVCPQTFSSLNILRKHKSNRHLTRCNLCQLRLPSAVLKQKHMEMEHPDDGSLQCDICYKNFHTKQGLKMHTRKCKGDLFDIAIKNEEFEVMDLDSNYESVKRPSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFPDSDLMREHTVMEHPVCDVKEKCIRKCRESVACVKIDISSLACKICFETMNNLDNLLDHLILKHNANYDKSITTCLQPYRLIKDNMACPNCPSEVFRFFGTLLKHMNNKHTNNNIICVYCGQTFRRDQNLRVHIWRHHRDGRFKCNICGAECNIPSRLYMHMAKAHGVKAAKCPKCPESFATQYLRQKHLIEAHDSGHKCSYCGKLFTRNSFMRDHIRRTHLKEKNVECSICNMKFFNNILLRRHMVKHSGEKNFHCDICGERFYWRKSLRTHMGRHNKLINAI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00354399;
- 90% Identity
- -
- 80% Identity
- -