Basic Information

Insect: Boloria euphrosyne
Gene Symbol: -
Assembly: GCA_951802675.2
Location: OX637899.1:6286352-6307961[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00029 0.028 15.7 0.7 1 23 212 234 212 234 0.99

2 11 0.0013 0.13 13.5 1.7 1 23 241 263 241 263 0.99

3 11 7.5 7.5e+02 1.7 0.3 1 8 267 274 267 290 0.80

4 11 0.0004 0.04 15.2 0.8 1 23 297 319 297 319 0.98

5 11 1.2e-06 0.00012 23.1 2.3 2 23 326 347 325 347 0.97

6 11 0.00033 0.032 15.5 0.8 1 23 353 376 353 376 0.95

7 11 1.1e-05 0.001 20.2 1.0 1 22 381 402 381 406 0.93

8 11 0.0012 0.12 13.7 0.2 1 23 414 437 414 437 0.94

9 11 0.0046 0.46 11.9 1.6 3 23 445 466 444 466 0.96

10 11 4e-07 4e-05 24.6 0.4 2 23 476 497 475 497 0.96

11 11 0.017 1.7 10.1 0.1 6 23 507 525 505 525 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00029	0.028	15.7	0.7	1	23	212	234	212	234	0.99
2	11	0.0013	0.13	13.5	1.7	1	23	241	263	241	263	0.99
3	11	7.5	7.5e+02	1.7	0.3	1	8	267	274	267	290	0.80
4	11	0.0004	0.04	15.2	0.8	1	23	297	319	297	319	0.98
5	11	1.2e-06	0.00012	23.1	2.3	2	23	326	347	325	347	0.97
6	11	0.00033	0.032	15.5	0.8	1	23	353	376	353	376	0.95
7	11	1.1e-05	0.001	20.2	1.0	1	22	381	402	381	406	0.93
8	11	0.0012	0.12	13.7	0.2	1	23	414	437	414	437	0.94
9	11	0.0046	0.46	11.9	1.6	3	23	445	466	444	466	0.96
10	11	4e-07	4e-05	24.6	0.4	2	23	476	497	475	497	0.96
11	11	0.017	1.7	10.1	0.1	6	23	507	525	505	525	0.89

Sequence Information

Coding Sequence: ATGGAAATATGCCAAGCTTGCCTGAAAACGGGAGATTATGTATATCCCATGACAGTACAAGATGTAAAATATTACCGGTTATTTATATCTAAGGTTGAAGATCCCTTAaacattatgtatatatgtatatattgcagaagcttattaaaaaagataataaagtTCATAGAACAATGCCAGACTGCCGATCTTTGGTTCCAAGATGTTAGAAATAAGGAAACCCCAGTTACTCTTAATAATTTGTCTAAGTCATCTGTAACATGTAACTATTTGGGTCCAGAAACCCAAATTGATGTTAAGTTAGAGGATGTGAAATGTGATGTCGTAGATGAAGATGACATTCCATtggtattattaaatgaaaatcatGATTATGATCATGGTAGCTATATTGAATCGGAAGACAGATTGgaaagtccttatagcaaagaaaatacTGTGAAAGATGAATCCTTAGAAATTGAACAGATAGAGAAAGCACCTAAGAAGAGTAAAAAGAAAGTGGTTAAAGAAGGTTTTTCATCGAGGATGGTCACCGAAACCAATGAGTATACTGTGATTAAGCTTACTAAGGAACagattttagaggAAATGCAGCGATATGCCGAGAGTGAGAAATATAAAATGATGCcatataaatgtgaaaaatgtGTGAAGGGATTTAATTTTGAGGATGTTTTGCAAAGTCATATGGAAAAGCACTCCGAGAAAAATGGGCCGTTCCAATGCGAGTTGTGTGAACAATACTGCCCCAGCAAAGTGTCTTTGAGGGGGCACATGAAGTCACATTCTTCTAGATATAAATGCAAGCTGTGCAATATAATACGACTCTCGCGCCAACACATTCTAGAGCACTACTCGCTGCAGCACGCGGCGTCGCCCGCGGTCTACTCGTGCCCTACCTGCGAGTATACCAcgaaCAAACGTACAGCGATGCAACGACACGTCCGAGTACACTCTTCAAACGAACCTCTAAAATGTCACATCTGTggtaaatattacaaaagtaaGGATTCACTACGGATTCATATTATGCGTCACGATGACAAAAAGTTGCATCAATGCGAGCAATGCTCGAGTTCGTTCGTGTACGCGGTGCAGCTGCAACGCCACCTCAAAGCCGTGCACGAGCGCCGCGACTACTACTGTGTTGAGTGTGACGTCATGTTTAAGTCAAGGGATAACTTGAAACGACACTTACAGCGTGCTAAGAAACATCGAGATTCATCTGCATACAAACACGAGTGCGGACACTGCTCGCAGCGCTTCGTGTCGCCGGGCGCGCTGGCGAGCCACGCGGCGCGTGCGCACGGTGGCGCGCGGCGCGAGGCGTGCGCGCACTGCGCGCGCCGCTACTGCAGCCGCGACGCGCTGCGCTGGCACGCCCGCAGTGCGcacgcgccgcgcgcgccgccgccgcgcctgCCGTGCGCGCTCTGCGGGAGGACCTTCTCGCGTAAGTACGTGCTGCGCGTGCACATGCGCACGCACACCGGCGAGCGCCCGCACGCGTGCCGCTGCGGCGCCGCCTTCACGCAGGCCTCCGCGCTGCGCGCGCACGTCGCCGCCAAACACAAGTCATTATACTGA
Protein Sequence: MEICQACLKTGDYVYPMTVQDVKYYRLFISKVEDPLNIMYICIYCRSLLKKIIKFIEQCQTADLWFQDVRNKETPVTLNNLSKSSVTCNYLGPETQIDVKLEDVKCDVVDEDDIPLVLLNENHDYDHGSYIESEDRLESPYSKENTVKDESLEIEQIEKAPKKSKKKVVKEGFSSRMVTETNEYTVIKLTKEQILEEMQRYAESEKYKMMPYKCEKCVKGFNFEDVLQSHMEKHSEKNGPFQCELCEQYCPSKVSLRGHMKSHSSRYKCKLCNIIRLSRQHILEHYSLQHAASPAVYSCPTCEYTTNKRTAMQRHVRVHSSNEPLKCHICGKYYKSKDSLRIHIMRHDDKKLHQCEQCSSSFVYAVQLQRHLKAVHERRDYYCVECDVMFKSRDNLKRHLQRAKKHRDSSAYKHECGHCSQRFVSPGALASHAARAHGGARREACAHCARRYCSRDALRWHARSAHAPRAPPPRLPCALCGRTFSRKYVLRVHMRTHTGERPHACRCGAAFTQASALRAHVAAKHKSLY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00723383;
90% Identity: -
80% Identity: -