Basic Information

Insect: Boloria euphrosyne
Gene Symbol: -
Assembly: GCA_951802675.2
Location: OX637881.1:12554323-12558908[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.03 2.9 9.3 2.7 2 23 32 53 31 53 0.95

2 14 0.00025 0.025 15.8 2.4 1 23 91 114 91 114 0.97

3 14 3.2e-06 0.00032 21.8 1.2 1 23 116 138 116 138 0.98

4 14 0.0047 0.46 11.8 0.3 1 23 173 195 173 195 0.98

5 14 1.2 1.1e+02 4.3 0.1 2 19 224 241 223 243 0.92

6 14 0.016 1.5 10.2 1.7 1 23 253 275 253 275 0.89

7 14 1.4e-05 0.0014 19.8 0.5 1 20 281 300 281 302 0.95

8 14 0.0081 0.8 11.1 0.2 1 23 312 335 312 335 0.94

9 14 9.9e-06 0.00098 20.2 0.1 2 23 341 364 340 364 0.95

10 14 1.7 1.7e+02 3.8 2.2 3 23 371 391 371 391 0.97

11 14 0.0083 0.82 11.1 0.2 1 20 396 415 396 418 0.94

12 14 0.00055 0.054 14.8 1.0 3 23 426 446 424 446 0.96

13 14 7.5e-06 0.00074 20.6 1.1 1 23 452 474 452 474 0.97

14 14 6.4e-06 0.00064 20.8 1.5 1 23 480 503 480 503 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.03	2.9	9.3	2.7	2	23	32	53	31	53	0.95
2	14	0.00025	0.025	15.8	2.4	1	23	91	114	91	114	0.97
3	14	3.2e-06	0.00032	21.8	1.2	1	23	116	138	116	138	0.98
4	14	0.0047	0.46	11.8	0.3	1	23	173	195	173	195	0.98
5	14	1.2	1.1e+02	4.3	0.1	2	19	224	241	223	243	0.92
6	14	0.016	1.5	10.2	1.7	1	23	253	275	253	275	0.89
7	14	1.4e-05	0.0014	19.8	0.5	1	20	281	300	281	302	0.95
8	14	0.0081	0.8	11.1	0.2	1	23	312	335	312	335	0.94
9	14	9.9e-06	0.00098	20.2	0.1	2	23	341	364	340	364	0.95
10	14	1.7	1.7e+02	3.8	2.2	3	23	371	391	371	391	0.97
11	14	0.0083	0.82	11.1	0.2	1	20	396	415	396	418	0.94
12	14	0.00055	0.054	14.8	1.0	3	23	426	446	424	446	0.96
13	14	7.5e-06	0.00074	20.6	1.1	1	23	452	474	452	474	0.97
14	14	6.4e-06	0.00064	20.8	1.5	1	23	480	503	480	503	0.98

Sequence Information

Coding Sequence: ATGGCTTCACACATCCATATAGACCAAGAGAGACCTCACTCAGCTATTCACCGGAGTCCTAAACCCACAACAATTGATTTAGTTGGTGGCATTCAATGTCATATTTGTCATGTTACTTATGCTAATAAAAGAGAATTCGACTTGCATTATGTTAAACATAAAACAGGAAGCAAAGACATAATATACACTTGTGTGGTTTGCTATAAAGAGATAACTGGCTATCCAAGTTTCCGTGGTCATTGTTACACAAGTCATGTTATCAAAGATAGATTCAAATGCGAACATTGTTCTAAATTATTCTCAAAATCGCTGTCCCTGAGAGAACATATTAATGTCATGCATAGATTTAAATGCTCAGTTTGCAGTAAAGAATTTACAACAAAAAAGGAGTTACAATTACATCAAATTATTCATAATGACACAGACATGCCACCATTCAAATGTCAAGCATGTGCTAAGCAAATAGACACTTTAGAAGGCTGTAAGGAACATGTCGATATGCATTCAGcttctatttatttttgtccCATTTGTAATGAAAACATTTCAAGTAAAGAAAATGCTTcagaacatttaaaaaaacattttggaGATATGAACGATGAAAACCCAGAAGTACAAACAAATTTGGAAAAGGAAGAAAATTACATTAAACAATTAGGTGGAATTTCATGTAAATTTTGCCCACTGATATATAAGGATAGGGTGGAGTTTGATGCCCATTTTTCATGCGAACATGGTAGTGAGGATATAGTCTACACCTGCAATGTATGTGGGAAACAGTTTGAAAAATATTCAGTGTTCAGTGATCATTCCTACAATCATGTTGTGAAGGACAGATTTTGCTGCGACATATGTCAGAAGACGTTCAGCCGTCTGTCCCTGCTGGTGACGCACATGGCGGCGTGCGAGGCGGGCGCGGAAGGCAAGCCGTTCGCGTGCGCGCGCTGCGGCCGCCGCTACGCGACTGAGATGCGCCTGCGCGAGCACCTGCGCGACGCGCACGCCATGCACTGCGTCACGTGCACCGAGGACGGGTGTAATAAAGTATTTCCAACACCCAAGGATTTGATCACCCACCAACGCGTGCACCGCTCACAGCAGAACTGGTGCCGCCAGTGCGGACTTCTGTTCACCTCCCTCAAGTCCTGCGAGCGGCATCTCGAAGTGCACAACAAGAAACTCTATGTCTGTCCTGTTTGCAATAGAAACTACAGCGAGAAATACCTCATACTAAAACATATACCGCAACATTTTGAAACTGTCCTACATCTATGCAAAGTCTGTGGAAAAGTATACAACGCCAAGAACAGATTGATAGAACACATCAAAACTCATGCTGAAACTAAAACACACAATTGCACTTACTGCGGAAAGGGATTTGTGAAACTAGGGCAGTTACAGCAGCATCTCAATGTTCATACCGGATCTAAACCGTACAAGTGTCCGGTTTGTGAAAAATCTTTCGCCAGCTACCCCAATTGGCATAAACATTTGCGCAGAATGCACAAAACTGACGGCAAAAAGTACAAGAAGCCAGAGAACGTTCCGGACATTACAGAATCAGATGATGTTGAAGAATCAGAATCTGAATCGCCCACAAATAGCTATgttaaagaaaacaatatttataaagaaacaaataaCTCTAACAATTTGAACGCACAGTTACATGTTGGTATATCAGAACTGTCGGATGCAAAACTGGAAAGCTTAATGTTCAATGAACCAGACGATAGTACGATGGAGTCGGATAGCATCGATCCGACTCTCATCGAGAAGGAGCTGCAAATATTCGAAAACTCTAACGATAATAGCAAGATAGTCGAGTTCGTTAATGTATTGCCGACTGCTGTAACTTTTGGtgATACCATACAAGAGAGCCCACAAACATCAAGCAACTATCCAGCTGAGTACGGACCGGAATTCAACACGGGCTTCCACACAGATGGTAGCGGGTTCATCGATCTGGACGACCACATGCTCCCCCACATAGATCCTTTACTCACAATAAAGAACGAATACAACCAAATGTACTCGCAAGACTATCAACCGAGCATCGAACCCGCACCCTACAACCAACCTAAGTGGGAACCCCTCATAACCAAAGTCTACCCAGATTACTCGTTTGGTTACGGAGATATGGTCGAAACGAACCGACTGTCGATGATGAACACagacatattttaa
Protein Sequence: MASHIHIDQERPHSAIHRSPKPTTIDLVGGIQCHICHVTYANKREFDLHYVKHKTGSKDIIYTCVVCYKEITGYPSFRGHCYTSHVIKDRFKCEHCSKLFSKSLSLREHINVMHRFKCSVCSKEFTTKKELQLHQIIHNDTDMPPFKCQACAKQIDTLEGCKEHVDMHSASIYFCPICNENISSKENASEHLKKHFGDMNDENPEVQTNLEKEENYIKQLGGISCKFCPLIYKDRVEFDAHFSCEHGSEDIVYTCNVCGKQFEKYSVFSDHSYNHVVKDRFCCDICQKTFSRLSLLVTHMAACEAGAEGKPFACARCGRRYATEMRLREHLRDAHAMHCVTCTEDGCNKVFPTPKDLITHQRVHRSQQNWCRQCGLLFTSLKSCERHLEVHNKKLYVCPVCNRNYSEKYLILKHIPQHFETVLHLCKVCGKVYNAKNRLIEHIKTHAETKTHNCTYCGKGFVKLGQLQQHLNVHTGSKPYKCPVCEKSFASYPNWHKHLRRMHKTDGKKYKKPENVPDITESDDVEESESESPTNSYVKENNIYKETNNSNNLNAQLHVGISELSDAKLESLMFNEPDDSTMESDSIDPTLIEKELQIFENSNDNSKIVEFVNVLPTAVTFGDTIQESPQTSSNYPAEYGPEFNTGFHTDGSGFIDLDDHMLPHIDPLLTIKNEYNQMYSQDYQPSIEPAPYNQPKWEPLITKVYPDYSFGYGDMVETNRLSMMNTDIF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00213795; iTF_00160066; iTF_00248338; iTF_00723364; iTF_00247434; iTF_01182098;
90% Identity: iTF_00248338;
80% Identity: -