Beup015487.1
Basic Information
- Insect
- Boloria euphrosyne
- Gene Symbol
- -
- Assembly
- GCA_951802675.2
- Location
- OX637885.1:4971077-4987589[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0012 0.12 13.6 0.0 2 22 34 54 33 54 0.93 2 11 0.15 15 7.1 0.3 1 12 220 231 220 240 0.86 3 11 5.7e-05 0.0057 17.9 0.4 1 23 393 415 393 415 0.98 4 11 4.3e-06 0.00043 21.4 1.3 1 23 433 455 433 455 0.98 5 11 0.00063 0.063 14.6 1.8 3 23 509 529 507 529 0.96 6 11 0.00062 0.062 14.6 2.6 1 23 545 567 545 567 0.98 7 11 1.7e-06 0.00017 22.6 2.7 1 23 573 595 573 595 0.96 8 11 0.0013 0.13 13.6 5.6 1 23 601 623 601 623 0.97 9 11 8.5e-06 0.00084 20.5 0.4 1 23 629 651 629 651 0.98 10 11 0.00023 0.023 16.0 0.1 1 23 655 677 655 677 0.98 11 11 0.00073 0.073 14.4 0.1 1 23 685 708 685 708 0.96
Sequence Information
- Coding Sequence
- ATGGGAGAGCCTAATATTTACTGCCCTCTTTGTTGCAATGATACCTTTGCAAGCAAGCAAGCACTTTCtgaacatttatttaatgtatcttCAAATTTGAATTGTCCTATATGCACTGAAAAATTTGAAACATTAGAACAATTAGTAGCTCATTTGAAACGTGATTATTGCAAATTAGTTAATTCTGATCAGATAACTGTTTTGGAACATAGCTCTCAAATTGAAATGAATGAGAGCTCTTTAGAAAAGAGAAATTTAAGACTAGATCAGAATGATGatAGTGAGGAGAATGACATAGAAAGGCAAATACCTTCCTTCCATACAACAAAAATGAGTAATAATCAAATTCCAGAAGTAGGAAAGATGTATGTAGAATTGTTAAGTAAACAACTTATGAAGCCTTGCTTACAAACTCAGGAATTGAAGTTAGTGAAAGAAGACGGAGAAAGTCGATATGTGATTTTGACAACAGAAGAATCGGTTTTGGATTCTGGAATGGCAATTGTAACAAAACAGAATAATGATGGTACTATATCCCTGACCACTTTAAaagATTCTCAAAGTATATCTAATGCAGAAGACAGAACAGATAGTGAGGATAATGCAACTTTAGAGACTAGTCAAGAGGCAGGATCTGACAGAAACCAAGAAGAATTCTATAGCTGCAATACTTGTGGAGTATCATTTTCATCTGTACTTGAACATATACAGAACTACCACAATGATCAAGATGTTGTTGTTGAGgaACCCATGGATGAAAATAACACTATCCCTATAGAATATGAACCAGTTCCAAAAGAGGAAACACCAGATAAACAAACATCAAGAAGAATGATAACAGACAATGGGGATATAATTGAAGAACCATTGATTGATGAAGACACTAGTgaagTGCAAAGGGAACCCGTGAAGTTTGTGGTTCCATTAAAAGAAGATACTCAGGAGAAGCAAGGGCGTGTGTACACGCGTCGCTATGTACAAATAGATAAATTAAGCAACAATGTAGTTAAGGATATTAAACCTACTGAAGaaaaaaatgATCCATACCATAAGGTGGTAATAAAAGAATTGCTTACTACCAAGGGAGAAAAGATAAAGGTATACAACTGTATGTcatgtaatatatatgtatcatCTCTGGCAGAATTCAACCAGCATCCATGTAAAgtttTAAAGTACCCATGTTCACAATGTCCTGTAGCCtacgaaaattcaaaatcattGTGTGCGCATATGAAAGTGCACAAAACAAAAATGGAATTAGTTTCAGGACCCACCTACATCGTACCGGATAAGTTTGAATGTGAAATATGTTCCACCGTGTTCTCTACGAGCAAGTCATTGAAACTTCACAAAAGAATGCATGATCCTATCAAATCTCGGCCAATAGAGCCTCCAATAGAAACACCGGAGGGCACGGCGGTGAGTGAAGACAAGTTCCTGTGCTCTGTGTGCGATAAGCTCATCCCCATGGACTATAGGACAATACACCAAAACTCGCATAAAACGTCCAACAAGATGAACTGCGACATATGCAATAAGAAGTTTCACTCGAGAGAGTATTTGGATATGCATATGAGTGTACATAATTTAGATAAGGTAATTGTAGGCAAGCAAGACAAGTCCCTCCCGTACACGTGTTTGTACTGCAACAGAAAGTTTGCGAGACCACATGAAAAAGTTAAACATGAAAGGATACATACAGGGGAGAAGCCGCACGCGTGCGAGATATGCGGCAAGGCGTTCCGCGTGTCGTACTGCCTCACGCTGCACATGCGCACGCACACCGGCGCGCGCCCCTACGCCTGCCCGCACTGCGACAAGAGGTTCAAAGCCCACAGTGTGTACAATCACCATCTATTAACACATTCAGAGGTTCGCGCCTACAAGTGCCCCTTCTGCCCCAAAGCGTTCAAGACGTCGGTGCAACTCGCCGGCCATAAAAACTCGCATACGAAACCGTTTTCTTGCCAACAGTGTAACAGGCCGTTCGCGTCGCTGTACGCGGTGCGCGTGCACATGGAGGTGCACTCGCGGCAGAACAGCCTGAAGTTCGCGTGCAAGCGCTGCGGCGCCAGCTACGCGCGCGCCTTCGCGCTCAACGACCACGTGCGCCAGGTGCACTGCGCGCCAGACCAGGAGAAGGTTAAAGAAGATTGGATGGTACAAGATAACGCGGACCTAGACTCGGATGGAATGCAACTGAATAAAGAGTTGCCGCAAGAGATAAATGAATTAAGCATGAGTTCAAGTGAACTGATTGTTCCATAG
- Protein Sequence
- MGEPNIYCPLCCNDTFASKQALSEHLFNVSSNLNCPICTEKFETLEQLVAHLKRDYCKLVNSDQITVLEHSSQIEMNESSLEKRNLRLDQNDDSEENDIERQIPSFHTTKMSNNQIPEVGKMYVELLSKQLMKPCLQTQELKLVKEDGESRYVILTTEESVLDSGMAIVTKQNNDGTISLTTLKDSQSISNAEDRTDSEDNATLETSQEAGSDRNQEEFYSCNTCGVSFSSVLEHIQNYHNDQDVVVEEPMDENNTIPIEYEPVPKEETPDKQTSRRMITDNGDIIEEPLIDEDTSEVQREPVKFVVPLKEDTQEKQGRVYTRRYVQIDKLSNNVVKDIKPTEEKNDPYHKVVIKELLTTKGEKIKVYNCMSCNIYVSSLAEFNQHPCKVLKYPCSQCPVAYENSKSLCAHMKVHKTKMELVSGPTYIVPDKFECEICSTVFSTSKSLKLHKRMHDPIKSRPIEPPIETPEGTAVSEDKFLCSVCDKLIPMDYRTIHQNSHKTSNKMNCDICNKKFHSREYLDMHMSVHNLDKVIVGKQDKSLPYTCLYCNRKFARPHEKVKHERIHTGEKPHACEICGKAFRVSYCLTLHMRTHTGARPYACPHCDKRFKAHSVYNHHLLTHSEVRAYKCPFCPKAFKTSVQLAGHKNSHTKPFSCQQCNRPFASLYAVRVHMEVHSRQNSLKFACKRCGASYARAFALNDHVRQVHCAPDQEKVKEDWMVQDNADLDSDGMQLNKELPQEINELSMSSSELIVP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00160065;
- 90% Identity
- -
- 80% Identity
- -