Basic Information

Insect: Boloria euphrosyne
Gene Symbol: -
Assembly: GCA_951802675.2
Location: OX637895.1:7155411-7157648[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.089 8.8 7.8 2.2 1 23 28 50 28 50 0.97

2 18 0.0023 0.23 12.8 0.3 2 23 78 100 77 100 0.93

3 18 7.3e-06 0.00072 20.7 3.2 1 23 123 145 123 145 0.98

4 18 0.048 4.8 8.7 0.2 2 23 150 171 150 171 0.95

5 18 1.3e-06 0.00013 23.0 1.2 1 23 176 199 176 199 0.96

6 18 0.26 26 6.3 3.4 2 23 209 231 208 231 0.90

7 18 0.00076 0.076 14.3 1.9 1 23 237 260 237 260 0.97

8 18 0.029 2.9 9.4 3.1 3 23 266 286 264 286 0.96

9 18 5.7e-05 0.0056 17.9 0.8 1 23 292 314 292 314 0.98

10 18 0.0049 0.49 11.8 0.9 1 23 354 376 354 376 0.98

11 18 0.0031 0.3 12.4 0.6 2 23 404 426 403 426 0.96

12 18 2.2e-05 0.0021 19.2 1.6 1 23 449 471 449 471 0.97

13 18 0.025 2.5 9.6 0.1 2 23 476 497 475 497 0.96

14 18 9.9e-06 0.00098 20.3 0.5 3 23 504 525 502 525 0.95

15 18 0.023 2.3 9.6 3.2 2 23 535 557 534 557 0.96

16 18 0.014 1.3 10.4 2.2 1 23 563 586 563 586 0.93

17 18 0.0099 0.98 10.8 5.2 1 23 590 612 590 612 0.98

18 18 0.00023 0.023 15.9 2.4 1 23 618 640 618 640 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.089	8.8	7.8	2.2	1	23	28	50	28	50	0.97
2	18	0.0023	0.23	12.8	0.3	2	23	78	100	77	100	0.93
3	18	7.3e-06	0.00072	20.7	3.2	1	23	123	145	123	145	0.98
4	18	0.048	4.8	8.7	0.2	2	23	150	171	150	171	0.95
5	18	1.3e-06	0.00013	23.0	1.2	1	23	176	199	176	199	0.96
6	18	0.26	26	6.3	3.4	2	23	209	231	208	231	0.90
7	18	0.00076	0.076	14.3	1.9	1	23	237	260	237	260	0.97
8	18	0.029	2.9	9.4	3.1	3	23	266	286	264	286	0.96
9	18	5.7e-05	0.0056	17.9	0.8	1	23	292	314	292	314	0.98
10	18	0.0049	0.49	11.8	0.9	1	23	354	376	354	376	0.98
11	18	0.0031	0.3	12.4	0.6	2	23	404	426	403	426	0.96
12	18	2.2e-05	0.0021	19.2	1.6	1	23	449	471	449	471	0.97
13	18	0.025	2.5	9.6	0.1	2	23	476	497	475	497	0.96
14	18	9.9e-06	0.00098	20.3	0.5	3	23	504	525	502	525	0.95
15	18	0.023	2.3	9.6	3.2	2	23	535	557	534	557	0.96
16	18	0.014	1.3	10.4	2.2	1	23	563	586	563	586	0.93
17	18	0.0099	0.98	10.8	5.2	1	23	590	612	590	612	0.98
18	18	0.00023	0.023	15.9	2.4	1	23	618	640	618	640	0.98

Sequence Information

Coding Sequence: ATGACATTATCTGAACGACAAAATGCTGCAATATTACTTGAAAATACAACAGTACGCCCATTTGTTTACTGTCGGTATTTTTTCAAATGCTTTTTTTGTTCAGAGCAGTTCTCAGAAGTACATGCTCTTTTAAATCATACGACTATCCATGAAATGCCCGGctatgataaaatattacaagatCTTTTGCCCAAAGGAAAGCGCACCATCAAAATTGATATATCTAATCTTCAatgtaaaatatgcaaaaaaagttTATCGGACATTGATCAGATAAGAAAACACTTAGAAGAAGAACATAAAAAAGGATTCACGCAATCTGGAAATGGAATGGTTGCCTACAATTTGTGTCTAAGAAATGGTCAGTTTTCGTGTCATATTTGTAACAAAACGTTTCAAACGTTCATACTGTTAAATCGTCATATGAACGTTCATTTTAGCAACGCCGTTTGCGAGATATGTGGCGCTGGATTTATGTCACACCAAAGACTGATTCAACACAAAGAAATACATTCCCCAGGAGGATACCCCTGCCGCAAATGTGGCAAGGTGTATACAACTCAATCTAATTTAAAGTATCATGTAGAGAAATCTCACGAGGGAGCCACCAAAATGCGGATGCTCCGATGTCCGCATTGCCCCGAAAGATTTACTGAACACTTTAGGAAACTTAAGCATCTAAAGGAAGTCCATGAAATAACCTTCACGTATGAATGTGATGTGTGTAGTTCAAAATTTACAAGTAGAAGAGCTCTTACCACTCATACAAATAAGTTCCACACTCAAAAGACATTTTGTGAAGTTTGTAGAAAAAGTTTTAGCTGTGTGACTACCTTAAAGAAACATATGCTTGCACATTCTGGTCGGAAAAATTTTACTTGTGGTCTGTGCGCCAAGTCTTACGGATTACAGAAAAGCTTAAATAGGCATATGAGAATGCACATAAACGAGTGCACTGGACCTACAAGTATATGGCAAATAACCGTACCAGAAAGAAATAACGCCGCCAGTTTCTTACAATTCACAACTGTCCGACCGTTTATTTTTATGGGCTCGAGCTTTAAATGCTTTTACTGTCTCCAATATTATTCGGATTTGGCTGATCTAATGGAACACACCTTGACCCATGATGTTTCTAACAgagatgttattttaaaaaaatacgtacacAAAGGAAAGCGTACACTGCAAGTGGATATATCACAGTTAAAATGCCGGTTATGTAACCAAAACTTTTCAAACTTGGATACGATTCGTGAACATTTGAAAGTGGAACATGTTAAACATTTCTTTTCAGCCAGTAACGGAATGACAGAATATAATATGGAAGTTAAAAACGGCTGTTTTGAATGCCACATCTGTAATGAAGCATTTAATTCATTCACTTATTTGAATTCACATATGAATGGTCATGTGGGCAAAGTCGTGTGCGAGAGCTGTGGAGCTGGATTCTTGAACAAgtatttgttaataaaacataaagaaaCTCATTCAACTACAACTATAAATTGTAAGTTGTGCGATAAAGTTTTCACCAAAAAAGGTCAGTTGAGATACCATATTGCAAAAGTGCATAAAGGAAAAGAGAGAGTTAAATTACAAAAGTGTGATCTATGTACCGAAACATTTAAAGAGCATTATAGTAAAATGGTTCACATGAGAAATACCCATGGAGTTTCAAAAACTTTTTCCTGTTACATATGCAGAAATAGCTTTGAAACGAGACGAGCTTTGACTCAACACACCACGCAGAAGCACACAGAAAAGTTCAAATGTGAAATTTGCTGTAAATGTTTCAGCATCGAGTCAAGATTAAAGCAGCACATTCGAGGGCACACTGGGGAAAGAATCTTCTCGTGCCCAATTTGTAAAAATAGTTACATGCATAAAATGACGTTAAGAAAACATATGGAAATTCACACTGTGAATTCTGATACTATAAAGCAATAA
Protein Sequence: MTLSERQNAAILLENTTVRPFVYCRYFFKCFFCSEQFSEVHALLNHTTIHEMPGYDKILQDLLPKGKRTIKIDISNLQCKICKKSLSDIDQIRKHLEEEHKKGFTQSGNGMVAYNLCLRNGQFSCHICNKTFQTFILLNRHMNVHFSNAVCEICGAGFMSHQRLIQHKEIHSPGGYPCRKCGKVYTTQSNLKYHVEKSHEGATKMRMLRCPHCPERFTEHFRKLKHLKEVHEITFTYECDVCSSKFTSRRALTTHTNKFHTQKTFCEVCRKSFSCVTTLKKHMLAHSGRKNFTCGLCAKSYGLQKSLNRHMRMHINECTGPTSIWQITVPERNNAASFLQFTTVRPFIFMGSSFKCFYCLQYYSDLADLMEHTLTHDVSNRDVILKKYVHKGKRTLQVDISQLKCRLCNQNFSNLDTIREHLKVEHVKHFFSASNGMTEYNMEVKNGCFECHICNEAFNSFTYLNSHMNGHVGKVVCESCGAGFLNKYLLIKHKETHSTTTINCKLCDKVFTKKGQLRYHIAKVHKGKERVKLQKCDLCTETFKEHYSKMVHMRNTHGVSKTFSCYICRNSFETRRALTQHTTQKHTEKFKCEICCKCFSIESRLKQHIRGHTGERIFSCPICKNSYMHKMTLRKHMEIHTVNSDTIKQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -