Basic Information

Insect: Boloria euphrosyne
Gene Symbol: -
Assembly: GCA_951802675.2
Location: OX637898.1:2740205-2742965[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 5.2 5.1e+02 2.3 1.0 6 22 196 212 195 215 0.87

2 13 2.9e-05 0.0028 18.8 0.5 1 23 242 264 242 264 0.98

3 13 0.0038 0.38 12.1 1.5 2 23 290 311 289 311 0.96

4 13 6.3e-05 0.0062 17.7 2.1 1 23 323 345 323 345 0.99

5 13 0.027 2.7 9.4 2.1 1 23 353 376 353 376 0.90

6 13 0.00016 0.016 16.5 3.3 1 23 382 404 382 404 0.96

7 13 2.2e-06 0.00022 22.3 2.6 1 23 410 432 410 432 0.98

8 13 5.5e-08 5.4e-06 27.4 0.8 1 23 438 460 438 460 0.96

9 13 7.5e-06 0.00075 20.6 2.1 1 23 466 488 466 488 0.98

10 13 9.2e-08 9.1e-06 26.6 0.9 1 23 494 516 494 516 0.98

11 13 0.00056 0.056 14.7 0.3 1 23 522 544 522 544 0.98

12 13 0.00015 0.014 16.6 1.5 1 21 550 570 550 572 0.96

13 13 1.2e-06 0.00012 23.2 0.2 1 23 578 600 578 600 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	5.2	5.1e+02	2.3	1.0	6	22	196	212	195	215	0.87
2	13	2.9e-05	0.0028	18.8	0.5	1	23	242	264	242	264	0.98
3	13	0.0038	0.38	12.1	1.5	2	23	290	311	289	311	0.96
4	13	6.3e-05	0.0062	17.7	2.1	1	23	323	345	323	345	0.99
5	13	0.027	2.7	9.4	2.1	1	23	353	376	353	376	0.90
6	13	0.00016	0.016	16.5	3.3	1	23	382	404	382	404	0.96
7	13	2.2e-06	0.00022	22.3	2.6	1	23	410	432	410	432	0.98
8	13	5.5e-08	5.4e-06	27.4	0.8	1	23	438	460	438	460	0.96
9	13	7.5e-06	0.00075	20.6	2.1	1	23	466	488	466	488	0.98
10	13	9.2e-08	9.1e-06	26.6	0.9	1	23	494	516	494	516	0.98
11	13	0.00056	0.056	14.7	0.3	1	23	522	544	522	544	0.98
12	13	0.00015	0.014	16.6	1.5	1	21	550	570	550	572	0.96
13	13	1.2e-06	0.00012	23.2	0.2	1	23	578	600	578	600	0.98

Sequence Information

Coding Sequence: AtggatagtaaaataatacaaaataataatatttgccgGACGTGTCTTAATGAAGCGGTTGATTATAAGTCGTTATTAAGCAAAATGGACGCGGACGATCGTACTCTCTTCGAAGTTCTTTCCTTTATAACAAGTACAGATATTTCTATAAGCGATAAATACCCAAAACAAATGTGTAATGACTGCTTCTTAACAATGTGCAAGGCTGATGAGTTCAAGAAGAGGTGCCTTCAGTCagaaaacttattaaaaactgAATTATTCCATTCTACTTTTCAAGATTTGGTCAAATATGAACCTATTTGTTCTAATTTCGACACGTTAAAAGCAAAATCGATTATAGAAAACCAAGAACATggtttattgaattttttaaataatcaatcAAAAGAAGAAGACGTACCTGTGATAGATTCAGATAGTATGAGTAACGGTAACTACAGGTATGAGAGCTTGAGAGCAATAAAAGAAGAGCATGACGATTTTCTTCAAGTTGAAATGGACGATTTAGCAGAAAGCAtagttatagaaaataaaaatgtacccaATACTAAAATAGATAGTTCCATTTCGAAAATATGTGCCTGTGAGTTTATTTGTACTGATCAATGTGAATTAGAAACACATATAAAAGAATGTAAGCACTTAGTTAATAAATGTGACTTGACTGATAAAAATGGTATTACTAGATTAGGAAACAAATTAATAgatgaaaaaaatgaattcaATTGCCCAGTTTGCGGCGAAAGATTTGAGTATCAAACGTTATATACACTACATTTAAATACACATaagaaaaaagttaaagttaaagatagaaaaataaaaagaaatcagGATAAAAAGGACATTTTGAAAATTCCACTAACATGCCCGGAATGTCAGAAGGAGTATCTGGATTTGCATTCCTTAAACAAACATTTAAGTAAACACAAAACTGATCGAGACtgtgaagaaataaaaaaatatcaatgttCAATGTGTATGCGTCAATTTAGTCGGAAATTTTCATTAATAGCTCACTTGAAAACGCATGAGGATAGAGCTCGGAAAATATTCACTTGTAAAGCTTGTAAGCGAGAATTTCAACACCAAGCTCATTTGGATAACCATGTTGTGTTAGTGCATTCTAAAGATAaagGTTTTACATGTGACAAATGTAATATAAGTTTCACCACTCAAGACTGTCTAGACCACCACATAGAAGGTCACAAGCTGCCGAAGAAGCACCAGTGCACGGTCTGCAGCAAAACCTTCACCATGTTGTCCACATTGACCGAGCACATGCGGATCCACACGGGGGAGAAGCCGTTCTTATGTTCCATCTGCGGGAAAGGATTCAGTCAGAAGAACAATCTTGCACAACATATGAGAAGGCATCAAGGGTTGAAGCCGTTCAAATGTGAACATTGTGAAAGGAGATTCGTATCAAAAGGTGAATTGGAGGCCCACAATAGAAAACACAGCGGGGCACATCCCTTTGTATGTGATGAATGTGGTAATAGTTTCACCACCTCTAGTTCCCTGACCAAACACAGACGCATTCACAGCGGAGAACGTCCCTATGCCTGTGACCTCTGCAGCATGAGGTTCGCTGCCCTGGGAACCCTAAAGAACCACCGAAGGACCCATACCGGGGAGAAACCCTACCAATGTTCACTCTGTGAGAAGGCCTTCATTCAACGTAATGATCTGGTCTCTCACATCAGATGTCACACCGGAGAGCGTCCCTACATATGCACTTATTGTGGACAAGGGTTCAGAAAAGCTTCAGCTTTGAAGGTTCATTTGAAGATTCATGGGAAGGATACTATggttatgtaa
Protein Sequence: MDSKIIQNNNICRTCLNEAVDYKSLLSKMDADDRTLFEVLSFITSTDISISDKYPKQMCNDCFLTMCKADEFKKRCLQSENLLKTELFHSTFQDLVKYEPICSNFDTLKAKSIIENQEHGLLNFLNNQSKEEDVPVIDSDSMSNGNYRYESLRAIKEEHDDFLQVEMDDLAESIVIENKNVPNTKIDSSISKICACEFICTDQCELETHIKECKHLVNKCDLTDKNGITRLGNKLIDEKNEFNCPVCGERFEYQTLYTLHLNTHKKKVKVKDRKIKRNQDKKDILKIPLTCPECQKEYLDLHSLNKHLSKHKTDRDCEEIKKYQCSMCMRQFSRKFSLIAHLKTHEDRARKIFTCKACKREFQHQAHLDNHVVLVHSKDKGFTCDKCNISFTTQDCLDHHIEGHKLPKKHQCTVCSKTFTMLSTLTEHMRIHTGEKPFLCSICGKGFSQKNNLAQHMRRHQGLKPFKCEHCERRFVSKGELEAHNRKHSGAHPFVCDECGNSFTTSSSLTKHRRIHSGERPYACDLCSMRFAALGTLKNHRRTHTGEKPYQCSLCEKAFIQRNDLVSHIRCHTGERPYICTYCGQGFRKASALKVHLKIHGKDTMVM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00213778;
90% Identity: iTF_00213778;
80% Identity: -