Beup024738.1
Basic Information
- Insect
- Boloria euphrosyne
- Gene Symbol
- -
- Assembly
- GCA_951802675.2
- Location
- OX637895.1:7387633-7390145[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.06 5.9 8.4 0.2 1 23 31 54 31 54 0.96 2 20 0.0029 0.28 12.5 0.0 2 23 85 107 84 107 0.94 3 20 0.00093 0.092 14.0 1.3 2 23 130 151 130 152 0.95 4 20 0.0022 0.22 12.8 1.5 1 23 157 180 157 180 0.95 5 20 0.009 0.89 10.9 0.3 1 23 185 208 185 208 0.94 6 20 0.00054 0.054 14.8 0.7 2 23 214 236 213 236 0.92 7 20 0.00015 0.015 16.5 0.1 2 23 244 266 243 266 0.97 8 20 0.019 1.9 9.9 0.1 2 23 273 294 272 294 0.96 9 20 2.7e-05 0.0027 18.9 5.2 1 23 300 322 300 322 0.96 10 20 5.3e-07 5.2e-05 24.3 1.4 1 23 328 351 328 351 0.98 11 20 0.0082 0.81 11.1 3.4 1 23 410 433 410 433 0.93 12 20 0.27 27 6.3 0.0 2 23 461 483 460 483 0.89 13 20 2.5 2.5e+02 3.2 0.7 2 23 506 528 505 528 0.94 14 20 2.1e-05 0.0021 19.2 0.4 1 23 533 556 533 556 0.95 15 20 0.00011 0.011 17.0 1.9 1 23 559 582 559 582 0.97 16 20 0.013 1.3 10.4 0.1 3 23 590 611 589 611 0.95 17 20 0.012 1.2 10.6 2.3 2 23 619 641 618 641 0.95 18 20 2.4 2.3e+02 3.3 0.7 1 23 646 668 646 668 0.95 19 20 7.9e-07 7.8e-05 23.7 1.5 1 23 674 696 674 696 0.98 20 20 0.13 13 7.3 0.5 2 23 703 725 703 725 0.92
Sequence Information
- Coding Sequence
- ATGGTGCGTAAACTGTTACACAAACGTCGAAATGTTGAATACGTTTTGCAATATAGTAATGTTACACCATTTATGTGGTATAAAGGAAAGTACAGATGTTTCTATTGTACCGAACCTATGAAAGATCCGGTACTTTTACGTGAGCATACGGCTAAAATGCACCAATTTGATAACTTAGAGCTCGTGGTCTATGATCGAAcgaaaaataatagaaataaggaTGCTGCTGTGAAAATTGACGTTACAGACATATCCTGTAAGCTGTGCCCCAGATCAGTTAACAGTTTAGAACAGCTAATAAACCACTTGATAATAGCTCATGATGCAGAGTACGATGTCAGCGTTCCGAACTGCTTTCTTCCTTTTAAGTTAGGCAAAGGGCAGCCCACTTGTCCTATATGTGATATGAAATTCGTCTTTTTCGAATATCTTCTACGTCACGCGAATAAACATCACCTATCACACGATTATATATGTGATGTGTGTGGCACAAGTTTTCAAGGGGAGAATCATTTGAAAATGCACAACAGATACTATCATAGAGAAGGGGGTTACACCTGCGATATTTGTGGTATAAGTTTGTCTACATTGTCAAAGAAGACTCTCCATGAAAAGAACGTGCATATGGTAAACTTATCTACTTGTCCATATTGTCCAAAAACATTCAAAAGTCCATATTTCAAAAAGTTGCATTTAGCGAATGAACATGGGGTTGAAGAGTTGAAAATCAAATGTCCTTACTGTCCCAAAGTATATCCTCAAGAGAGTATAATGTCACGTCATATGAGACGCGTTCATTTGAGGGAAAAGAATGTGGAATGCCAAATTTGTGGCGATAAATTCTTTGAACCATACGATGTTAAATTGCACATGTTGAAGCATAATGGCGATAAAAAGTTCATGTGCTCTTTTTGTGGAAAAAAATTTTCTAAGAAGAGCAACTTAAATTCTCACTCGTGCATTCATACGGGGCAGAAAAAATATGTATGCTCGTTATGTGACAAGGATTTTTCTCATAGATACAATTTGATTCAACACATACAAACATGGCATCCTCAGAATATGGTAGACCAAGATCAAGAGATGGGTGTTACTGATGATATTGACAggataagaaaaagaaaatatcaagAGGCATGTCTAGAACGATTAACTATCCTACGAAGCAATATATTAACCCTACTGCAGTATGGGAACGTTGTGCCCTTCCACTGGAACACGCGAGGCTTTAGATGTTTTTACTGTGGGAAGCAAATTAAAGACTGTGATTCTTTAAAAGAACACACAACACTCAGCCACAAATCCATAGACTTACATTCGTTTATACCGCAACGAATTATAAGCAAGGACGTCCCAATTAAAATAGACATTACAAACCTGTCTTGTAAACTCTGCAATACACCTCTAGCAAGTATTGAAGATCTAATAGCTCATATAGTAGCTGTACATGGTCAAGAATATGATAATTCAGCTGGAGTTTGCGTGTTTCCATTCATTCTCACTAACGCAATTCTAAAATGCGTCATCTGCGAAGATAAATTTGACAATTTTACTTCTATGATGGGGCATATGTACAAGAAGCATATCGACCACCCCTATATGTGCCAGATTTGTGGTCTGAGTTTTATAGACAAAGTTAGGCTGAAACGGCACATCAGTAACAGTCACGTTGGATACAGGTGCAAAATTTGTGGGAAAATCTTCGACGCATTACACAAACTTGAAAAACATAAGCAAAGGATTCATGGTATTCAAAAGACAGTTGCATGTAGCCTCTGCAGTGCAATTTTCGAAAGTCAGTACCAAATGAAGGTTCATATGGGCAAGATCCATAATGTAGAGAAATATAGGATAAAATGTGAACACTGCTCTAAAATTTGCACAACCAAAGGCGCCATGTTGTTACACGTCCAATCGCTCCATTCGGATGTCAGATTTGAATGCGACCTTTGCGAATATAAAACTGGTATCAAATGGATGATCAAATTGCACAAACGTAAACATTTCGGGGAGAAAAACTATGTATGTAGCTTATGTGAGAGACATTTCGGAAGGTCTAGTAATCTTAGAGCTCATATGAAGGTACATACGGGGAATGTTGGTAGAGTGTGTCGATGGTGTCGCCACGGCTTTATCGATTCGGAAAGTTTGGATAAGCACGAAAAAGACGCTCATTACTATGatcaatataattaa
- Protein Sequence
- MVRKLLHKRRNVEYVLQYSNVTPFMWYKGKYRCFYCTEPMKDPVLLREHTAKMHQFDNLELVVYDRTKNNRNKDAAVKIDVTDISCKLCPRSVNSLEQLINHLIIAHDAEYDVSVPNCFLPFKLGKGQPTCPICDMKFVFFEYLLRHANKHHLSHDYICDVCGTSFQGENHLKMHNRYYHREGGYTCDICGISLSTLSKKTLHEKNVHMVNLSTCPYCPKTFKSPYFKKLHLANEHGVEELKIKCPYCPKVYPQESIMSRHMRRVHLREKNVECQICGDKFFEPYDVKLHMLKHNGDKKFMCSFCGKKFSKKSNLNSHSCIHTGQKKYVCSLCDKDFSHRYNLIQHIQTWHPQNMVDQDQEMGVTDDIDRIRKRKYQEACLERLTILRSNILTLLQYGNVVPFHWNTRGFRCFYCGKQIKDCDSLKEHTTLSHKSIDLHSFIPQRIISKDVPIKIDITNLSCKLCNTPLASIEDLIAHIVAVHGQEYDNSAGVCVFPFILTNAILKCVICEDKFDNFTSMMGHMYKKHIDHPYMCQICGLSFIDKVRLKRHISNSHVGYRCKICGKIFDALHKLEKHKQRIHGIQKTVACSLCSAIFESQYQMKVHMGKIHNVEKYRIKCEHCSKICTTKGAMLLHVQSLHSDVRFECDLCEYKTGIKWMIKLHKRKHFGEKNYVCSLCERHFGRSSNLRAHMKVHTGNVGRVCRWCRHGFIDSESLDKHEKDAHYYDQYN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00213779;
- 90% Identity
- iTF_00213779;
- 80% Identity
- -