Basic Information

Insect: Boloria euphrosyne
Gene Symbol: -
Assembly: GCA_951802675.2
Location: OX637900.1:6556198-6564942[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 2.6e-08 2.6e-06 28.4 0.9 1 23 189 211 189 211 0.98

2 14 0.0019 0.19 13.1 4.5 1 23 217 240 217 241 0.95

3 14 0.001 0.1 13.9 1.2 1 23 246 268 246 268 0.98

4 14 0.0013 0.12 13.6 3.8 1 23 273 295 273 295 0.97

5 14 1.7e-05 0.0017 19.5 2.1 1 23 301 323 301 323 0.98

6 14 3.2e-07 3.2e-05 24.9 1.7 1 23 329 352 329 352 0.95

7 14 1.6e-07 1.5e-05 25.9 1.3 1 23 358 380 358 380 0.98

8 14 6.8e-06 0.00067 20.8 1.2 1 23 386 408 386 408 0.99

9 14 7.1e-05 0.0071 17.6 0.9 1 23 414 436 414 436 0.99

10 14 1e-07 1e-05 26.5 0.8 1 23 442 464 442 464 0.98

11 14 6.4e-07 6.4e-05 24.0 1.4 1 23 470 492 470 492 0.98

12 14 0.063 6.2 8.3 2.9 1 23 498 517 498 517 0.95

13 14 1e-06 0.0001 23.4 0.6 1 23 523 545 523 545 0.98

14 14 0.00023 0.023 16.0 6.1 1 23 551 573 551 573 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	2.6e-08	2.6e-06	28.4	0.9	1	23	189	211	189	211	0.98
2	14	0.0019	0.19	13.1	4.5	1	23	217	240	217	241	0.95
3	14	0.001	0.1	13.9	1.2	1	23	246	268	246	268	0.98
4	14	0.0013	0.12	13.6	3.8	1	23	273	295	273	295	0.97
5	14	1.7e-05	0.0017	19.5	2.1	1	23	301	323	301	323	0.98
6	14	3.2e-07	3.2e-05	24.9	1.7	1	23	329	352	329	352	0.95
7	14	1.6e-07	1.5e-05	25.9	1.3	1	23	358	380	358	380	0.98
8	14	6.8e-06	0.00067	20.8	1.2	1	23	386	408	386	408	0.99
9	14	7.1e-05	0.0071	17.6	0.9	1	23	414	436	414	436	0.99
10	14	1e-07	1e-05	26.5	0.8	1	23	442	464	442	464	0.98
11	14	6.4e-07	6.4e-05	24.0	1.4	1	23	470	492	470	492	0.98
12	14	0.063	6.2	8.3	2.9	1	23	498	517	498	517	0.95
13	14	1e-06	0.0001	23.4	0.6	1	23	523	545	523	545	0.98
14	14	0.00023	0.023	16.0	6.1	1	23	551	573	551	573	0.98

Sequence Information

Coding Sequence: ATGTCGGAATCGTtgaatttaaacaatatttgtcgCTGTTGTCATACTGAGGGTTCTTTCAAACAACTAAATGATTCATATTTACATAACGGACAACAAAAAATCTATTCAGAAATGTTGAATCAAACATTTAATGTAGAAataaaaccAGCTCCTGACTTATCATACTCTATATGTGATATATGCATTCCGAGGTTATGTGATGCTTATAACTTCCGTCATCAAGTTTTTTCATGTGAACAACTGTTATATCAATACTATACACAATTAAAAGGAATAGGATTCAGTTACAAAGATGTTAAAGATGAAGTTGAAGAAACAGtagaagGAACCGCGTTCAATTACAAAGATATTAAAGATGAAGTTGAAGAAACACAAgatgatttagTTAAAGAAACTGTTAATCAAGATGAAAATAGCTGTGATCGGAAATATGATGATGCTTCGTTCAGTGATTCCGGAGACATTGATGATCAGCCTCTTTCAACTTTGAGGGTTCAGTCGGAGCAGAATGACTGGATGTTTCCAAacgaCGCCAAAGtaacgaaaaataaaactaaaaagtttaGCTGTAACATATGCGATAAGAAGTTTTCGTACAACGGCTCGTTGGAAGTGCACATGCGGACGCACACTGGGGAGAAAACCTACTTGTGTCACATTTGCAACACCAAATACAGTCTGAACAAAGAACTAATAAAGCACATAACAACGAAACATCATCAAAACGGGTCATTCCCCTGcactttttgcccaaaattgtTTGAAAAGGCGAGATTTCTGAAAAATCATCTATCTACCCACTTTGGGGGTGATTTTAAATGTATTCACTGTAATAAAGAGTTTCAAAGGAAGAAAGGGTTGAAGGAGCACTTAAAAATACACACAGGGGAGAGAAATTTTACGTGTAATATATGTAGTGAGTCCTTCGGTCATAATCAGACGTTGAAGTCACATATACTCACTCATACCGGAGAGAGGCCATACGTCTGTGATGTATGTGGCCGGAGATTTTCTCAACGAACTCACCTAAAAaggcatatatttataatacacacCGGTGTTAAACCATATGTATGCAAGATTTGCAACAAACCATTTTCAAGTAAAAGTTATCTCTCGATACACCAAAGGCAGCACACTGGGGAGCGGCCGTACACTTGTGATGTATGCAAGAAGAATTTCACAGCGTATACGACACTTAAAGTCCACATGAGAGTCCACACCGGACTGAAACCGTACGTCTGTTCGTTTTGCGACCGCCAATTCGCTCAACTGGCCAGTTTTAAGTTACACGAGCGGACGCACACTGGGGAGCGGCCGTTTTCGTGCAAAGTGTGTAAAAAGGCGTTTTCTGATAACGGCTATTTGAAAATACATATGCGGGTGCACACTGGGGAGAAGCCGTTCAATTGTGAGATATGCAAACGCTCGTTTAGAGAGACTGGTCAGTTAAAACGGCATATGCGTGTACACACGGGGGTTAAACCGTACACGTGCAAGATATGTAATAAGCAAATAGGTAATTTGTCCAAACACATGCGAGTACATTCAGACGAACGGCCATTTAATTGTGATATATGCAATAAACAGTTCTCCATTAGTGGAAATTTGAAGTTGCACATGCGGGTGCACACTGGGGAGCGGCCGTTCAGCTGTGAAGTATGTAACAGCCATTTTACTCAGAGTAGTGGCTTAAAAAGACATAGATGTACACATGAAAAGACAGAGTGA
Protein Sequence: MSESLNLNNICRCCHTEGSFKQLNDSYLHNGQQKIYSEMLNQTFNVEIKPAPDLSYSICDICIPRLCDAYNFRHQVFSCEQLLYQYYTQLKGIGFSYKDVKDEVEETVEGTAFNYKDIKDEVEETQDDLVKETVNQDENSCDRKYDDASFSDSGDIDDQPLSTLRVQSEQNDWMFPNDAKVTKNKTKKFSCNICDKKFSYNGSLEVHMRTHTGEKTYLCHICNTKYSLNKELIKHITTKHHQNGSFPCTFCPKLFEKARFLKNHLSTHFGGDFKCIHCNKEFQRKKGLKEHLKIHTGERNFTCNICSESFGHNQTLKSHILTHTGERPYVCDVCGRRFSQRTHLKRHIFIIHTGVKPYVCKICNKPFSSKSYLSIHQRQHTGERPYTCDVCKKNFTAYTTLKVHMRVHTGLKPYVCSFCDRQFAQLASFKLHERTHTGERPFSCKVCKKAFSDNGYLKIHMRVHTGEKPFNCEICKRSFRETGQLKRHMRVHTGVKPYTCKICNKQIGNLSKHMRVHSDERPFNCDICNKQFSISGNLKLHMRVHTGERPFSCEVCNSHFTQSSGLKRHRCTHEKTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00213773;
90% Identity: -
80% Identity: -