Beup015558.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Boloria euphrosyne
Gene Symbol
-
Assembly
GCA_951802675.2
Location
OX637885.1:5930811-5939976[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 9.1e-05 0.009 17.2 0.1 3 23 130 150 129 150 0.97
2 18 8.2e-07 8.2e-05 23.7 1.2 1 23 156 178 156 178 0.99
3 18 5.1e-06 0.00051 21.2 2.7 1 23 184 206 184 206 0.99
4 18 3.4e-06 0.00033 21.7 2.6 1 23 221 243 221 243 0.98
5 18 4.7e-05 0.0046 18.1 3.1 1 23 258 280 258 280 0.98
6 18 3.3e-07 3.2e-05 24.9 1.5 1 23 295 317 295 317 0.99
7 18 0.00014 0.014 16.6 2.8 1 23 323 345 323 345 0.98
8 18 0.00049 0.049 14.9 0.1 1 23 352 374 352 374 0.99
9 18 1e-05 0.001 20.2 2.1 1 23 380 402 380 402 0.99
10 18 0.033 3.3 9.2 1.8 1 23 409 431 409 431 0.98
11 18 5.5e-07 5.5e-05 24.2 2.3 1 23 437 459 437 459 0.99
12 18 0.038 3.8 9.0 1.8 1 23 466 488 466 488 0.98
13 18 2.3e-06 0.00022 22.3 1.5 1 23 494 516 494 516 0.99
14 18 0.00043 0.042 15.1 0.7 1 23 523 545 523 545 0.99
15 18 2.5e-06 0.00025 22.1 1.9 1 23 551 573 551 573 0.98
16 18 0.0018 0.18 13.1 0.3 1 20 579 598 579 601 0.93
17 18 3.4e-05 0.0034 18.6 1.3 2 23 608 629 607 629 0.96
18 18 3.2e-06 0.00032 21.8 1.4 1 23 635 658 635 658 0.97

Sequence Information

Coding Sequence
ATGTTTGAACAACAAATCAAGGCAGAGCCTATGAGCTTTTACCCACATCCACATGTGAACACTGGTCCCCCAACAATAGTCCGTTCAGATTCAAATCATGGTATTATTATGAACCAACACCATCCACAAGAAGATTCAAAGGATAGCCTCATAGTACAACACCAAGTACAACACCAACAGGAGCTGCTGGATCAGCACCAACAACATGAAGAATTACATGAAGATGATGTTGATAATTTAAGTTTTAAAGGTATGGAAGATGAAGGTGTTGAAATGGATATGGATGGCAGACAATGTTCTCAGGGTATGGGAGTTGACATGGGATCGGTTCAAACTAAAATGGAACTATCAAATGGTGGTCAAGTGCCAAGGTCTAAACCTCAGGCCTGTAAGGTCTGTGGAAAAGTCCTTTCATCTGCTTCATCATATTATGTTCATATGAAGCTACACTCAGGAAACAAACCCTTCCAATGCACGGTTTGCGACGCAGCGTTCTGTCGCAAGCCGTACCTAGAAGTGCACATGCGCACGCACACCGGCGAGCGCCCATTCCAGTGCGACCTCTGCCTCAAACGCTTCACCCAAAAGTCCAGTCTCAACACGCACAAACGCGTCCACACCGATGAGCACATGCAGGCTCTGATGGTGAAGGAGCGCCCCTACAAGTGTGAGCTCTGTCAGATGCGCTTCACGCAGAGCTCCAGCCTCAACAGACACAAGAAAATACATACGGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGCCGACATGGAAAGATACACACCGAGGAACACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAATGCGACATCTGTGACAAGCGGTTCACGCAGAAGTCCAGCCTTGGCACTCATAAACGTATACACACCGGCGAGCGGCCCTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTACACGAAAAGATACATACGGTGCAAGGGCGACCTTACACGTGCGGGCGATGCCCCGCGGCGTTCGCCCGCCGGCCCTACCTGGACACTCACGTGCGCACGCATACAGGCGAGCGGCCCTATCAGTGCGACGCGTGTCTCAAACGCTTCACGCAGAAGTCCAGCCTGAATATACATAAACGGACGCACACAGTCCAGGGGAGACCGTTCCAGTGCCTGTCCTGTCCCGCCGCCTTCACCTGCAAGCAATACCTGGAGATACACACGCGCACACACACCGGCGAGCGCCCGTATCAGTGCGACATCTGCCTCAAGCGCTTCACGCAGAAGTCCAGTCTCAACATCCACAAGCGGACGCATTCGGTGCAGGGCCGCCCGTTCCAGTGCCTGCAGTGCCCGGCCGCCTTCACCTGCAAGCAGTACCTCGAGATACACAACCGCACGCACACCGGCGAGCGCCCCTACCAGTGCGACGTCTGCCTCAAGAGATTCGCGCAAAAGTCCACTCTCAACATACACAAACGAACGCACACAGTGCAAGGGCGGCCGTATCAGTGTATGGAGTGCCCGGCGGCGTTCACTTGCAAGCCGTACCTGGAAATCCACATGCGCACGCACACTGGCGAGCGCCCCTTCGAGTGCGATGTGTGTTACAAACGCTTCACCCAGAAATCTACCCTCAACATTCACAAGCGCATCCACACCGGGGAACGTCCATATGCATGTGATATTTGCCAAAAACGGTTCGCGGTGAAAAGTTACGTAACAGCGCACAgATGGTCGCACGTGGCGGACAAGCCGCTGAACTGCGAGCGGTGCTCGATGACGTTCACGTCCAAGTCGCAGTTCGCGCTGCACATCCGCACGCACTCCAGCGGGCCCTGCTACGAGTGCAGCGTGTGCGGACGCACCTTCGTGCGCGACAGCTACCTCATAAGACATCACAACCGTGTGCACCGCGAGAACCACAGCAACGTGTCGGCCAACAGCATCGGCACCATCAACAGCGTGGCCGCCAACGCCAACAACGGCGGCTTCGACTCGCCCGGCGTCTGCGACCTCAGCTTCGTGCCAATGGTGAACCGCTACATGACGTCACAGGGCACGCAGGTGTCGATGCAGGACTCGCAGAGCAAGATGTCCGCCATGTCGCCGCAGTCCATCGCCTCCATTTCGTCTCCGCCGCCGCCGCACACGCCCACGCCGCAGCCGCAGATGTCGATGCGTCTCGCTGATTGA
Protein Sequence
MFEQQIKAEPMSFYPHPHVNTGPPTIVRSDSNHGIIMNQHHPQEDSKDSLIVQHQVQHQQELLDQHQQHEELHEDDVDNLSFKGMEDEGVEMDMDGRQCSQGMGVDMGSVQTKMELSNGGQVPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMQALMVKERPYKCELCQMRFTQSSSLNRHKKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTVQGRPYTCGRCPAAFARRPYLDTHVRTHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCERCSMTFTSKSQFALHIRTHSSGPCYECSVCGRTFVRDSYLIRHHNRVHRENHSNVSANSIGTINSVAANANNGGFDSPGVCDLSFVPMVNRYMTSQGTQVSMQDSQSKMSAMSPQSIASISSPPPPHTPTPQPQMSMRLAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00824939;
90% Identity
iTF_00248309;
80% Identity
-