Basic Information

Insect: Boloria euphrosyne
Gene Symbol: clz9_4
Assembly: GCA_951802675.2
Location: OX637896.1:1195373-1198216[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 2.7e-07 0.00013 22.4 0.0 1 41 8 47 8 50 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	2.7e-07	0.00013	22.4	0.0	1	41	8	47	8	50	0.85

Sequence Information

Coding Sequence: ATGGCTCAGAGAAAAAATTATACTCCCGACCAGTTAGAAAAAGCCGTAGAAGCTGTAAAAAATGGCGAAAAGATTGCAGTTGCTGCGAAACGTTTCGGAGTACCTAGGATTACGCTCCATGATAAAATTTCGGGAAAAACAACAATGGGTTGTGCTATGGGGCCGAGCACAGTCTTAACTAAAGGGGAAGAAGACATTTTGGAAAAGTGGATATTAGCGTTATCTGAAAGACATATTCCACTGACAAAAGCCCAGCAAGAAAGCAAGTGGTTTCAGTCGTTCATGAAGAGACATCCAAACTTGACACAAAGAGTGCCAGACAACTTGTCAAGAGCTCGAGATAATGTGtctgaaaataatattaggaCTTGGTTTAATGAGATCGAAAATTATTTGGatgaaaataactataaaactattttaaacgACCCACACAGAATATTCAACGCAGACGAGACCGCGTTCTTCTTGTCACCTAAACCTGGTCGTGTACTCGCCAAAAAAGGAGATAAACACCCATACAGTAGCTGCGGTGATGAAAAGGACAATCTTACTGTCCTAATAACTGGAAATGCAGCTGGAGACCTAGCCCCTCCAATgatcatatttaattatgaacGAATTCCTTCGACTATCGCTGTGAGTGTTCCCGATGAATGGGCAATAGGTAAATCGGAGAGTGGGTGGATGTGTAGCAGCACGTTCTATGAATATATGACTAATGTATTCAATCCTTGGTTAGagcaaaataatattgaaaaaccGGTCTTGTTCTTTGTGGATGGCCACAAATCACACTTAACGCTTCATTTATCAAATTTTTGCTCCGAAAATGGTATTGTAGTCGTTGCTTTGTACCCCAATTCTACGCATATTCTACAACCAATGGACTTGTCAGTATTCAGACCACTCAAAGCTCATTGGAAAAAAGCCGTGACGCAATGGAAAATGGAGAACCTTGGCAAAATTCTTCGAAAAGAGAACTTTGCCCCAGTGTTGCAAAAAGCTCTCACAAATATAACAAAAGATTGTATCCAAAACGGATTCCGAGCGGGAGGTCTTTTTCCGTTTGGTCCTGATTACATCGATATGTCTAAAATATCTAAAACCGAAAATAGAAACACACTGGAAAGAGAAATCCCTAATGAAGACGAGGCTTTATATTTGATTTGGGCCAAAAACAAATCCGAAGACGCGTTGTGTCATTCAAGTTCGTCGGATGCTCCTACAACGTCAGACACAAACGAACAGGCGAGGTATCCGTCAAATGATGTAACCACTGCTCAAACGAATGATGTTGTTGTAACCGATGAAGTAATGGTTATACCATCAGATGCTGGTGACGCTGTGCCTACAAGCACTGAAGAAATGCACTTTAACAGCATGCAGATGGAAAAATCCACTAAAAATTTTCTTGTAGCAAAAAAGTTCACCACTGATGATGAAACATTTCCATCTGAGTCCATATCCTCAACTAATTTGCCTAAAGTGATAGTAGAATATCTTCCCCAACAAGTAAACTATAACGTCAGGCATGATGCTGTTATCCAACCTCTTCCACCGTCGGCACGTTCTTTACCAACCGATTTATCTAAAGATCCTCTAATGCAACAACCTAACAATGTCCCCAAGACTGATACTGTTACAAACCAACCTGTTTTAATACCGGAACTTACTTCACCCATTGGTTCAGCTGAAGTAACAGGAGATCCTCAAAGGCAACAACCTGATAATAGCTCCACAGTTAATACATTACTCGATCAAGCACTTCCACAACCGAATCCTTCATCTTCATCCAGTTTCCCTGAAGTAATAGGAAATAACCTATCTCAACAACCTATCATTAGTACTATGGAACCGCAGTACACAACACCACAAAAGTCTTTGGAAAAAGTTTTGGGAGTGATTGTTCCATCTCCTTTTAAGAGGAGTCTGTTTTGGCCGGAAAATTGGATGGATAGTAATAAGAAGAGAGTGAAACGAGAGAAAATTCCATCAACAGTAACAAGTAAAGCTTGGAAAGAGTATCAcgagaaaaatagaaaacagcAAGAAAAAGACGAAAGAGCTAGACAGAGAatagaaaaaaagaaattaaaagaacAGTTAACCAATGAAAAGAACAATAAAAgcaatattaagaaaaataagaaaactgttcaaaaagattcgacttcagaaGAGTCAGATATGGAGATTTCATACGCTGAAAGTgttattagttataatttagaAGATGACGAAGACAATGAACcagaaagagaaaaaataactaatacgAAGAATCAGATAGACTGTGATTCTATAGACTCGGATTTAGAGAATTTGCCCTTAAGTAAAATTGCATCTTTAAAAGCAACTAAaccaaataaaaacattaagttTTCGATAGGAAATTTCGTAATTATTAAGTATGAAGGGGAGTATTTTCCTGGTAAAATAGAAAGCTTGAGAAAGAACGAGTACGAAATAAGCACAATGACATTGACTACTGGAAATTCTTTTAAATGGCCTAACCCGCCcgataaaattttctataagcTCAAGGAAATAATGGAAGTGATAAAGGAACCTATATGTTTAAACAAGAGAGGGTTTTATAGAATTCCAGAAATGGATAAATATTTGCCAAATATGTATGGCTTTTAA
Protein Sequence: MAQRKNYTPDQLEKAVEAVKNGEKIAVAAKRFGVPRITLHDKISGKTTMGCAMGPSTVLTKGEEDILEKWILALSERHIPLTKAQQESKWFQSFMKRHPNLTQRVPDNLSRARDNVSENNIRTWFNEIENYLDENNYKTILNDPHRIFNADETAFFLSPKPGRVLAKKGDKHPYSSCGDEKDNLTVLITGNAAGDLAPPMIIFNYERIPSTIAVSVPDEWAIGKSESGWMCSSTFYEYMTNVFNPWLEQNNIEKPVLFFVDGHKSHLTLHLSNFCSENGIVVVALYPNSTHILQPMDLSVFRPLKAHWKKAVTQWKMENLGKILRKENFAPVLQKALTNITKDCIQNGFRAGGLFPFGPDYIDMSKISKTENRNTLEREIPNEDEALYLIWAKNKSEDALCHSSSSDAPTTSDTNEQARYPSNDVTTAQTNDVVVTDEVMVIPSDAGDAVPTSTEEMHFNSMQMEKSTKNFLVAKKFTTDDETFPSESISSTNLPKVIVEYLPQQVNYNVRHDAVIQPLPPSARSLPTDLSKDPLMQQPNNVPKTDTVTNQPVLIPELTSPIGSAEVTGDPQRQQPDNSSTVNTLLDQALPQPNPSSSSSFPEVIGNNLSQQPIISTMEPQYTTPQKSLEKVLGVIVPSPFKRSLFWPENWMDSNKKRVKREKIPSTVTSKAWKEYHEKNRKQQEKDERARQRIEKKKLKEQLTNEKNNKSNIKKNKKTVQKDSTSEESDMEISYAESVISYNLEDDEDNEPEREKITNTKNQIDCDSIDSDLENLPLSKIASLKATKPNKNIKFSIGNFVIIKYEGEYFPGKIESLRKNEYEISTMTLTTGNSFKWPNPPDKIFYKLKEIMEVIKEPICLNKRGFYRIPEMDKYLPNMYGF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00212400;
90% Identity: -
80% Identity: -