Bhyb014374.1
Basic Information
- Insect
- Bolitophila hybrida
- Gene Symbol
- Zcchc4
- Assembly
- GCA_027564075.1
- Location
- JANSTU010006779.1:4459-7324[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.17 10 6.9 4.8 1 23 467 489 467 490 0.93 2 8 0.00051 0.031 14.9 0.3 1 23 570 593 570 593 0.96 3 8 0.00051 0.031 14.9 0.2 1 23 632 654 632 654 0.97 4 8 0.023 1.4 9.7 4.9 1 21 668 688 668 689 0.95 5 8 0.00037 0.022 15.3 1.6 1 23 703 725 703 725 0.96 6 8 8.6e-05 0.0052 17.3 1.1 1 23 731 753 731 753 0.98 7 8 0.00091 0.055 14.1 0.1 1 20 759 780 759 781 0.96 8 8 0.017 1 10.1 1.4 1 16 790 805 790 806 0.94
Sequence Information
- Coding Sequence
- ATGGACTCTCAAATACAATTGGTTGACGTAAACTTATCAGAAGTCAACAGACCATGCTGTACTCATGGTCCAGTACTAACGTTTCGTCGAATTTTTAATGATGGCAGCGAATCGGTCTTCTTTGATGCCTGTTCAGCATCCCGCGGAATTGAGTGCAAAGTTTTTAAGGTTCCAAGTGAATCGGATAGACTGCTTGATGCTAAGAATTCTCAGCAAAAAGCTCAACAGAGTTATGAGAAAATGCAACAGATTCGCCTGGATGCATCAGAAACTCGAGTCTACTGTCACACGTGCAAAACTTTTGTTCTACCAGCTAAAAAGGAACAGCATAAATCACATGACATGCAAATTGGAATTTCAAATGAAACACTTGAAAAACCCACAACATTGTTGAAGCCACTGAGCAATGACAAGCAGGAGGCCCAGTATTTCTTTGCTGACCAGACTCTTAAATGCATTGCTAATAATTGCAAACAACTAAAACTAGGAAAAGTTGTGTGCATTGGAGCACCTCGTCTGCACGAATTCTTACGGCAGCACTTCGAGTCCTTGAAGATTCAAAGTATTTTGTTGGACTTTGATAGTAGATTTTCAGCATTCTACAAAAGTGACAATTTTTTGCTGTACAATATGTTCAATCATCATTTCTTTGGAGGCGACACAGAGAAAAACACATTTGAACAGTTTCTCAAAGAAGATGGTGACCAAAGAGTGTGCTTGTTTACGGATCCTCCGTTTGGATGTCGAACTGAAACTCTTGCAAGCACGATCAAGTGTATTGCACGTAGGTACCAGGAAGTGAATAAGTTCAATGATATCCTAACCGTTATGTGGGTGTTTCCGTACTTCATGGAACAGTACATCATAAATGTAATGCCTGAGATGAGTATGGTTGATTACAAGGTAGACTATACCAATCACAAACTGTACCATTCTGGAGAGAAAGGCCGAAAGCAAGGGTCACCTATACGTATCTTCACAAATATACCCTTGAATCACATTCATTTACCCGAATTAGATGGATACCGTTTGTGTCGACCCTGTGAACAGTATCGATCGATCGAAAACATTCACTGTGCTGTCTGCAAAACATGTCCGTCCAAAAATGGATCGAAATATGTCCATTGTAACCAGTGTGCTGTATGTGTGAAACCGTCTTACCGGCATTGCAGCCAGTGCAATCGATGCACTCAGATTCAGGGACACACATGTAATGAATATCAGCGCAATCTAACATGTTGGATTTGTCGGCAAAAGGGTCACAATGAGCTGAACTGCACAGAATGGTTTTCATTAAAGAAATCAAAATCATCTAAGAAATATTTGAAGTTGGGAGCCGTTAAAAAGAGGTGTTTTCTTTGCAATTCGACTGGTCACAACGAAAAGTCATGTGAGCCGTACAAATGTGATTTATGTGATGTACACTTTAAACTCAATAGTTTTCTGTTGATGCACAAGTTTGAGCACCACAGTGAAAAAGAAAGACGAAGGAAAATATCCGGTTTTTTGAATGCACTCCTCGAAAATGAATCCGTTTATTCGTCAGACAGTGACTGTGATTACGAGATCGTCACAACGGTGCGAAGGGTACCGCGGCAAAAACCTATACTTCAAATTACTAATGAGATCGAGCCTAAAGTCGACGAAGCGTTAGCGACCATTAAAATAGAACTTCCCGTAATCGAGAATACAGAAACGCACAACCGATTTACATGTGATATTTGTGGCCTTAGTTTTAACAAGATTCAACTTGTACGGAAACACATAGAAAAACTGCATTGTCATCAAAATTTAGAAGAATATTCGAAAGTTGTTGGTGAACAGCCTAGAAAAATTGAGAATAATGATGACATTAACAACCATAAACCAACAAATATTATTGAAACAGAAACATTTTCTTGTGAAATATGTTTTGAGGTATTTTCTAAGCAGATTGATCTGTCTCTGCATTTAAATGCACATAATTGTCATTCTACGAAAAATAGTGCTGCTGAGAAACCCTTCAAATGTGAGCAATGCAATAAATTATTTATGCGAAAAAAATGCCTATTCTCGCATCAACTAAAATGTGTTCTGCCCAAGACAAAAGCACCGAGTTCCAAATTATACTTGTGTAGTTTTTGTGGTAAAAAATATCCTGCCTCAAATCATTTGAAGGTTCATTTGCGACTTCACACCGGCGAGCGGCCTTTTCGTTGTACGATATGTTCAAAAGGATTTTCCATCAAAAAAACATGGCAGGATCATATGAACATGCATGCCGGTCACAAACCATATCAGTGTCCTGTGGACGGATGTGACAAGTCATTTTCGCACGGTAGTGGTGTACGGCAGCACATCATCTGTATGCACACGGAATTAAAGAAATTCCAATGTGAATACTGTCAGAAAATGTGCTCAACGAAAATACATTTAATGTAA
- Protein Sequence
- MDSQIQLVDVNLSEVNRPCCTHGPVLTFRRIFNDGSESVFFDACSASRGIECKVFKVPSESDRLLDAKNSQQKAQQSYEKMQQIRLDASETRVYCHTCKTFVLPAKKEQHKSHDMQIGISNETLEKPTTLLKPLSNDKQEAQYFFADQTLKCIANNCKQLKLGKVVCIGAPRLHEFLRQHFESLKIQSILLDFDSRFSAFYKSDNFLLYNMFNHHFFGGDTEKNTFEQFLKEDGDQRVCLFTDPPFGCRTETLASTIKCIARRYQEVNKFNDILTVMWVFPYFMEQYIINVMPEMSMVDYKVDYTNHKLYHSGEKGRKQGSPIRIFTNIPLNHIHLPELDGYRLCRPCEQYRSIENIHCAVCKTCPSKNGSKYVHCNQCAVCVKPSYRHCSQCNRCTQIQGHTCNEYQRNLTCWICRQKGHNELNCTEWFSLKKSKSSKKYLKLGAVKKRCFLCNSTGHNEKSCEPYKCDLCDVHFKLNSFLLMHKFEHHSEKERRRKISGFLNALLENESVYSSDSDCDYEIVTTVRRVPRQKPILQITNEIEPKVDEALATIKIELPVIENTETHNRFTCDICGLSFNKIQLVRKHIEKLHCHQNLEEYSKVVGEQPRKIENNDDINNHKPTNIIETETFSCEICFEVFSKQIDLSLHLNAHNCHSTKNSAAEKPFKCEQCNKLFMRKKCLFSHQLKCVLPKTKAPSSKLYLCSFCGKKYPASNHLKVHLRLHTGERPFRCTICSKGFSIKKTWQDHMNMHAGHKPYQCPVDGCDKSFSHGSGVRQHIICMHTELKKFQCEYCQKMCSTKIHLM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -