Bhyb011697.2
Basic Information
- Insect
- Bolitophila hybrida
- Gene Symbol
- -
- Assembly
- GCA_027564075.1
- Location
- JANSTU010014419.1:37646-42273[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.73 44 4.9 0.4 2 23 747 770 746 770 0.87 2 11 0.00011 0.0068 17.0 1.0 1 23 805 828 805 828 0.95 3 11 3.3 2e+02 2.9 0.0 2 23 851 871 850 871 0.87 4 11 0.0003 0.018 15.6 1.2 1 23 877 899 877 899 0.91 5 11 8e-05 0.0048 17.4 2.0 1 23 905 927 905 927 0.97 6 11 2.4e-05 0.0015 19.0 4.9 3 23 937 957 936 957 0.97 7 11 0.00015 0.0089 16.6 0.2 2 23 962 983 962 983 0.97 8 11 0.018 1.1 10.0 2.4 1 23 1000 1022 1000 1022 0.97 9 11 5.8 3.5e+02 2.1 0.1 1 9 1028 1036 1028 1041 0.88 10 11 0.001 0.063 13.9 1.9 1 23 1057 1080 1057 1080 0.96 11 11 0.00076 0.046 14.3 0.2 2 23 1145 1167 1144 1167 0.93
Sequence Information
- Coding Sequence
- ATGTCACAACGATGCTTCGTTCCAAAATGTGAAACGGTATTTAAGAAGGGACTTACAAAATTTCACCACTTTCCTAACAATAATAACATTTTCGACAAATGGATTATTGCCATTCGAGCGAATAAAATTCCATCAACATACTCAAAAATATGTAGTAAACATTTTCAAAATACTGATTATGGACTAACCTTAAGTACTGGACGTCCTAAACTCAAAGTAAATGCAGTGCCTAGCCAATATTTGCCTGAAAAAGATCAAATAAATTATAGAGATACAAAATATAGCAACGAACCGAAACAAGATCGACAGCGCTCTCAAGGCGAATGGAAGTGTTTAAATAAAGACGCAGTTCCTTTTGAGAAATACCCAAATAATCCAATCGAAAGCGCACCCGATGAGACCAACGACGAACACGATCCATTAAAAATAACCATGAACATACCCATAAAGCTAAAATCCAACAAGAGATGCTGTGTGCCGCAATGTAATGGAAAATCGGATAAGACAAATGCATTACACAAAATGCCACAGTCTAAGGACTTACTTAAGGTCTGGTTGGACAATTTGAAGATTTCTCATAAGTTGTCGATCAAACACGCTCTAGTGTGCAGTGCTCATTTTGGTAAACATGATTTTTTCGGAAAGCTGAATGAATCAGGTACTGGAAGATTTCTGAAGCCTTCCGCTATACCTACACTTAATCTACCAGACACGAATTATAATAAGTCACCGAAGTCTAGTCTTGGATTACAGCAGAAGAAAATAACAGATCGGAATCAGCAACAACAGGGCAAACAAGAAGATGTTTTATCGGTTAATATGCAGCCCAAGGTTATTCTGAAAAAGCTCAATGGTGATATCGAAACTGGTATGTTTAGCGGCAAAGCGGTTAAAAATAAACAGGACACGCCAGCAAAGAGCATACCAATCATACGGAAAATCTTACCCGAATGCTGTGTTCCCAATTGTAATGGAACTATTTCTATTTCCGTGAGTTTACACTGCTTTCCCAAACTTTCGGATACTGCTGAAAAATGGAAAGTACTACTGCAAATAAATAAACCAATTGTAATTGGTATGATGGTTTGCAGCAAGCATTTTCGAGACACGGACTTTTATATTGATAAAAATGGCATCCGACGACTTAAGTCACGATGCGTACCTAGTTTAAACCTTCCGGTTGATCCATTGATTGATCCCGTACCACAGGAAATCGAAAGCGTATTTTTCATGGAAGTCGTGGAGGAGCCAGTTGTAAAACAACCACCATTAAAAGGAGATGCAATGGAAATAGAACCAGATATTAAATTACAAAAAAACAATAAATCAAAAGTTGAAATACCGAAAATTATTTTACCAACAATTAAAAAGGTTGAACATTTTCCAAAATTGCCAACAAAAAACGTTGCCTTTCATTTACGGTGCTCTGTTCTCGGTTGCCAAGCCGACATTCGTGTTAGTCCGAATCGTCGCCTATATACACTGCCCGCCGTTTCAAATATCCAAATCTCAATGTATCAGCTGCTCGAAAAGAAACGCCAGGAAGCGTGGCTCGAGGCGATTTCGCATAGAATCAATGTACCCGCTGGAAATGCTCACATTTGTACAAGTCATTTTATCACAGGCAAACCGGCAAATGTATTGAATTACACACACTCGGATTGGGTACCGAACGTATGGCCAGACAGTATAGACACAAAGAAATATTTATTTAAACCTTTCAAACACAACATTGGCTATTGGATTTTTGGACTAGACAGTGCTGATACTAAAGCCAAAGCTGAGCTTTGCGAATTGCCTGCACCTCATAAAATAGTTCATAAGATTCATAAAACCTCAGGTTTACAAACTCCAACCGAGGATCTAACTACAATCAAAATACAGACTCCAAACAAAAACTGCGAATTGCCTACACCCGCTAAGAAAAGATCAAATATACAAATTCCAACCGAGGATCTAATTCCAATCAAAATACCAACTACGAAAAAAGTACAAACACCAACCAATACAAAAACTCAAAATGATAGTGTTGTGACTATAGACCTTTCCTGTGATGACAACGATCCTGTCGACCAGCCAGACTCGAGTTTAAATACTCTAGAAACCGATGAATCATCATCTGACGACGAACCAATGCCACAGATTACGAATATTAAGTGTACCAGCTGTAGCACAATCTTTGACACATTTCTAAAGTACAATAATCACTTTTTCGAGTGTTCCACCTGTGTTCCGGACACCTGTAAAATCTGTGACACTCCCGCAAATACAAAAGACATAGACCAATTTCGTAAGCATCTAAACAGTCACTCGGTGCGTCGCTTCTTTCGTTGTGTTGTATGTGCTTTCAACAAAGTTGGTTCTACGCTTACACAACTGGATCATATACGCGAGCACTCGAAACAGCGACTGTACATTTGCGATACATGTGGTACTGCATTCGTACACAAAGATCACTGGAACACTCACATCATCAATGATCATCTGCCACTATTCAAAAAAACAGTTGGAAATAAACAAACGACCATACCATCACTGCCAGAACAGATTGTTTGTGAAAAATGTGGTGAAACAATAGAAAAAGTAAATATTCAAGCTCACTATGATATTCACAATACAAGCGATGCATATGCTTGTATTCTGTGCAACGAAAAATTCCGCACACGTAGCGGTCTTCAGCGACATCAGAAAAACCACTCAAACATTAAAATATACACATGCGATTTTTGTGACAAATCATATAGTACATGGAAAACATTCGTAAAACATGTATCTCAGCATCCCGCTGATAAAACTGCTGATAATAATTGCAAAAAGTGTCCGAAGAAATTCACTCATTCCAGTCTGCTCAAGTATCACATGAATTCGCATGATACTGAAAATGTTTGTCCGATCTGTAAAAAGGCCTTTATAGAAAAACGCCTCCTAGATGTGCACTTAAGACGGCATCAAAAAGACGCAAACGATTCTGTATGTACAGTCAACGATGCGATTTCATTTCATTGCAATTACTGTAACTCAGTGCTGCCATCTAAACAAACCCTATCAGAACATATGAAACAACACCAGGATCTACGTTTGTACACATGTGAGTTGTGCAACAAAAAATTGGTTGGCTCGGAATTGGATGAGTTCGAGCATAAAGAAGGTCATTCCAGTCGATTGCCTCATATGTGCGGTTTGTGTGGCAAAGAGTATGCTTCTTTGACCAACTACGAGGATCACATGCATACAACGCATCCATCACAACAACCGCTGAAACTAACAGCTTTACCGAAACGATATACATGTGATCGTTGTGAGCCTACCACTTCGCATGCGACAATGTCATTGTTGCAGTTACACAAGGCTAACAAGCATAATGTTAGGTTCAAGTGTCAATTGTGCAATGTGTTTGTTTCGGATTTTGTTGCACACAAGCTTAACCACAAGTACTGTACGATTTGCAAAACACCCTTTGCCTCTGACGCCAATTTGGCCAGACACATGTCTGCAAGGCATTCAAATGCTTGA
- Protein Sequence
- MSQRCFVPKCETVFKKGLTKFHHFPNNNNIFDKWIIAIRANKIPSTYSKICSKHFQNTDYGLTLSTGRPKLKVNAVPSQYLPEKDQINYRDTKYSNEPKQDRQRSQGEWKCLNKDAVPFEKYPNNPIESAPDETNDEHDPLKITMNIPIKLKSNKRCCVPQCNGKSDKTNALHKMPQSKDLLKVWLDNLKISHKLSIKHALVCSAHFGKHDFFGKLNESGTGRFLKPSAIPTLNLPDTNYNKSPKSSLGLQQKKITDRNQQQQGKQEDVLSVNMQPKVILKKLNGDIETGMFSGKAVKNKQDTPAKSIPIIRKILPECCVPNCNGTISISVSLHCFPKLSDTAEKWKVLLQINKPIVIGMMVCSKHFRDTDFYIDKNGIRRLKSRCVPSLNLPVDPLIDPVPQEIESVFFMEVVEEPVVKQPPLKGDAMEIEPDIKLQKNNKSKVEIPKIILPTIKKVEHFPKLPTKNVAFHLRCSVLGCQADIRVSPNRRLYTLPAVSNIQISMYQLLEKKRQEAWLEAISHRINVPAGNAHICTSHFITGKPANVLNYTHSDWVPNVWPDSIDTKKYLFKPFKHNIGYWIFGLDSADTKAKAELCELPAPHKIVHKIHKTSGLQTPTEDLTTIKIQTPNKNCELPTPAKKRSNIQIPTEDLIPIKIPTTKKVQTPTNTKTQNDSVVTIDLSCDDNDPVDQPDSSLNTLETDESSSDDEPMPQITNIKCTSCSTIFDTFLKYNNHFFECSTCVPDTCKICDTPANTKDIDQFRKHLNSHSVRRFFRCVVCAFNKVGSTLTQLDHIREHSKQRLYICDTCGTAFVHKDHWNTHIINDHLPLFKKTVGNKQTTIPSLPEQIVCEKCGETIEKVNIQAHYDIHNTSDAYACILCNEKFRTRSGLQRHQKNHSNIKIYTCDFCDKSYSTWKTFVKHVSQHPADKTADNNCKKCPKKFTHSSLLKYHMNSHDTENVCPICKKAFIEKRLLDVHLRRHQKDANDSVCTVNDAISFHCNYCNSVLPSKQTLSEHMKQHQDLRLYTCELCNKKLVGSELDEFEHKEGHSSRLPHMCGLCGKEYASLTNYEDHMHTTHPSQQPLKLTALPKRYTCDRCEPTTSHATMSLLQLHKANKHNVRFKCQLCNVFVSDFVAHKLNHKYCTICKTPFASDANLARHMSARHSNA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00211666;
- 90% Identity
- iTF_00211666;
- 80% Identity
- iTF_00211666;